| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3028 |
|---|
| Symbol | |
|---|
| ID | 6178976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 3359063 |
|---|
| End bp | 3359599 |
|---|
| Gene Length | 537 bp |
|---|
| Protein Length | 178 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641682804 |
|---|
| Product | type VI secretion protein |
|---|
| Protein accession | YP_001809720 |
|---|
| Protein GI | 172062068 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3516] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03358] type VI secretion protein, VC_A0107 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATAT CCAGCAGTGC ACAGAAATTC ATTGCGCGAA ATCGTGCTCC GCGCGTCCAG
ATCGAGTACG ACGTCGAGAT CTACGGCTCC GAGAAAAAGG TGGAGCTGCC GTTCGTGATG
GGCGTGCTCG CCGATCTGTC CGGCAAGCCG CTGGAGTCGT TGCCGGCAGT CAGCGATCGC
AAGTTCTACA ACATCGACAT CGACAACTTC GACGAGCGGA TGAAGGCGAT GAAGCCGCGC
GTCGCGTTTT CGGTCCCGAA TACGCTGTCG GGCGACGGCC AGCTGCTGGT CGACATCACG
TTCGAAAGCA TGGACGACTT CTCGCCGGCC GCGATTGCGC GAAATGTCGA TGCGCTGTCG
CAGCTGCTCG ACGCGCGCAC GCAGCTCGCC AACCTGCAGA CCTACATGGA CGGCAAATCG
GGCGCGGAGA ATCTCGTCAG CAAGGTGCTG AAGGACCCGG CGCTGCTGAG CGCGCTCGCC
AAGGCACCGA AGCCTGAAGC ACGGAAGCAG GACGCTCAGG AGCCGCAAGA ACAGTAA
|
|---|
| Protein sequence | MAISSSAQKF IARNRAPRVQ IEYDVEIYGS EKKVELPFVM GVLADLSGKP LESLPAVSDR
KFYNIDIDNF DERMKAMKPR VAFSVPNTLS GDGQLLVDIT FESMDDFSPA AIARNVDALS
QLLDARTQLA NLQTYMDGKS GAENLVSKVL KDPALLSALA KAPKPEARKQ DAQEPQEQ
|
|---|
| |