| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3024 |
|---|
| Symbol | |
|---|
| ID | 6179010 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 3354804 |
|---|
| End bp | 3356153 |
|---|
| Gene Length | 1350 bp |
|---|
| Protein Length | 449 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641682800 |
|---|
| Product | type VI secretion protein |
|---|
| Protein accession | YP_001809716 |
|---|
| Protein GI | 172062064 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3522] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR03353] type VI secretion protein, VC_A0114 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 38 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTTGGC ATAACAAGGT CGTGTGGAGC GAGGGTCTTT TCCTGCTGCC ACAACTGTTC
CAGCAGCAAG AGCGCTATTT CGAACATTTC GCGCACAAGC GTTCCGCGCC GCTCAGCCCG
TTCTTCTGGG GGTTCAGTCA GTTCGAGATC GACCAGGAGT CGCTGGCATT CGGCAAACTC
GTATTCAAGA GCGGAGCCGG CGTGTTTCCC GACGGCACGC CTTTCGACGT GCCGGCGCAT
GCGCCGCCGC CGCCGCCGCT GACGATCGCG CCCGAGCACC AGAACCAGGT GATCTATCTG
GCCGTCCCGT TGCGCCTGCC CAATACCGAA GAGACGGTGT TTCGAGACGA GACGGCATCG
CTGGCTCGCT ATCTGGCATT CGAAAACGAG CTGCGGGACA GCAACACGAT CGGTCAAGGC
CCCAAGCCCG TGCAGCTGGC GAACCTGCGC TTGCGACTGC TGCCCGAGAA GGAACTGACG
CAGTCGTGGA TCGGCATCGC GCTGACGCGC ATCAAGACGC TGCGTGCGGA CGGCTCGGTG
TCGCTGCACG TCACCGATCA CATTCCGCCG GTCAGCCAGT ATGGCGCCGA CCCGCTGCTG
CGCGAATGGG CGACGCAATT GCATGGTCTT ACGAAGCTGC GCGCCGATGC ACTGGCCACC
CGCCTGTCGG GTAGCGACGG GCGTGCGGGC GCCGCGGCGG AAGTGGCCGA TTACCTGCTT
CTGCAGGTGC TGAATCGCTA TGAGCCGCTG CTCGAGCATA TCTGCCGGAT TCGCGAGACG
CCGCCGATGG TGTTCTATCG CGAACTCGCG ATGATGGCGG GCGAACTGTC GACGTTCGTT
CGTCCGCAGA CGCGTCGTCC TCTGCCGACA CCGGGCTACG ATCATGCGCA GTTGTTTGCG
AGCATCCGGC CGCTCGTCGA AGAAGTCCAC TATCTGCTCA ACCAGGTGCT GATCCGCGGT
GCGCAGCCGA TCCCGCTCAC CGAGCAGCCG CATGGCATCC GCGTCGCCGC GGTGATGCCG
GCCGAACTGT CGGGCTATTC GAGCCTCGTG CTGGCGGTCG GCGCGCAGAT GTCGCCGGAT
GTGCTCCAGC AGCAATTCGC GGCGCAGACG AAGATCAGCC AGCCGCAGCG TTTGCCGGAG
CTCATTCGTT CGCACCTGCC GGGCCTGACG ATGGTGCCGC TGCCGGTGCC TCCGCGGCAG
ATTCCGTTCA ATTCGAGCTA CATCTATTAC GAGCTGTCGC GCAGCGGACC GTTCTGGGAG
CAGATCGCGC AACAGGGCGG ACTCGCGATG CACATCGCCG GTCATTTCCC CGAGTTGAAG
CTCGAGCTCT GGGGGGTGCG CCATAAATGA
|
|---|
| Protein sequence | MSWHNKVVWS EGLFLLPQLF QQQERYFEHF AHKRSAPLSP FFWGFSQFEI DQESLAFGKL
VFKSGAGVFP DGTPFDVPAH APPPPPLTIA PEHQNQVIYL AVPLRLPNTE ETVFRDETAS
LARYLAFENE LRDSNTIGQG PKPVQLANLR LRLLPEKELT QSWIGIALTR IKTLRADGSV
SLHVTDHIPP VSQYGADPLL REWATQLHGL TKLRADALAT RLSGSDGRAG AAAEVADYLL
LQVLNRYEPL LEHICRIRET PPMVFYRELA MMAGELSTFV RPQTRRPLPT PGYDHAQLFA
SIRPLVEEVH YLLNQVLIRG AQPIPLTEQP HGIRVAAVMP AELSGYSSLV LAVGAQMSPD
VLQQQFAAQT KISQPQRLPE LIRSHLPGLT MVPLPVPPRQ IPFNSSYIYY ELSRSGPFWE
QIAQQGGLAM HIAGHFPELK LELWGVRHK
|
|---|
| |