| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_3022 |
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| Symbol | |
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| ID | 6179018 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 3349580 |
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| End bp | 3353488 |
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| Gene Length | 3909 bp |
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| Protein Length | 1302 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641682798 |
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| Product | type VI secretion protein IcmF |
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| Protein accession | YP_001809714 |
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| Protein GI | 172062062 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 35 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTATT TGAAACGTCT TTTCAGATGG TTGGTTTCGT GGCGGATGCT GGCGTGCGTG
GCGATGCTGC TGGCGTGCGT GGCGGTCTGG TTCCTGGGAC CCCTGTTCGT GTTCGGCGAA
CTGCATCCGT TCGCCGGCGC CGTGATCCGT TCGATCGTGA TTGCGCTGTT GGTGTGCCTG
CTCGTCCTGT GGCTGCGGCG GTGGCCGCTG AGTCCGATCT GGGTGATCGC GCTTTGCGTC
GCGCTTTGGC ACGTCGGGCC GTTGTTCGGA TTCGCGGAGC ATCATCCGCT CGAGCCGATC
TGGGTACGCG TGCTGATCGT CGCCGCGATC GTGTTCTGCT ATGCCGTCTA CGGGCTCTAC
AAGTTGTGGC AGGCGCTGCG GTCGAACGAT GCGCTGCTGA AGCGCTTTCT CGAGCCGAAG
GGCGATCAGC CGGTCGAAAT CGGCCGCGAC GAGGTGCGCG CGGTCGCCAT GGTGGTGTCC
AAGGCGATTG CGCAGTTGAA GCGCCTGCGT GGCGGCACGC TCGGGTGGCG TCGCTGGCTC
GAGGTGGACC GCCATCTGTA CGGATTGCCG TGGTACATGA TGCTGGGGAC GCCGGGAGCC
GGGAAGACGA CCGCGATCCT CGGCGCGGGC CTGCAGTTTC CGTTGACCGA TCAGATGGGC
GCGATGTCCG CGCACGATAT CGAGCACACC GCGAACTGCG ATTGGTGGTT CGCGAACGAG
GCGGTGCTGA TCGACACCGC CGGCCGCTAC GTCGAACAGG ACGACGCAGC GGACGAAACG
GCCACGACGA TCAATGCCGC GGAATGGAAG GAGCTGCTCG GTCAGTTGCG CAAGCATCGA
CCGCGTGCGC CGCTCAACGG CGCGATCCTG ACGGTCAGCG TCGCGGATCT GGTCAACCGG
TCGGAGGCGG AGCGCACCGC GCTCGCGGCA AGCCTGCGCG CCCGTCTCGG CGAGCTGCGC
CAGCAACTGG GGATTCGTTT CCCGGTATAC GTGTTCGTGA CGAAACTGGA CCTGCTGCCC
GGCTTCACCG AATATTTCCA GTCGCTGACG GCGGACGGGC GCACGCAGAT CTGGGGCTTT
ACGCTGCCGT GTGACGAGTC GGGCGAGGCC AGTGTCGACG GGCTGCGACG TCACTGCGTG
CACGAGCTGG CGCTGCTCGA AGCGCGGATC GATGCCGGCG TGAACAACCG CTTGCTGGAA
GAATACGAGA GCGATCGTCG CAAGCGGTTG TACCCGCTCG CACAGGAATT CCGCGGTCTG
TCGATGCTGG TTGCGGATTT GGTCGAACTG GTGTTCCTCG ATTCCCGCTA TGACGACGCG
CAGTTGCAGA ACATGCTGCG CGGCGTGTAT TTCACGAGCG CCGAGCAGAC GGACCAGATG
GTGGCCGTCG ATCGCGAGAC GGTGCTGCAG CGGCTGAAAC GCAAGCTCGC GCGCCTTCGT
ACGGTCAGCG ACACGGCAGC GCAAGCGCGC GGCGACGGGG CGATAGCAGG GCATCGGAGT
TTCTTCCTGC GCAATGTGTT TCAGCACGTG ATCGTGCCGG AGGCGCATCT GGTCCGTGCC
GACCTGAAGT GGGAGATACG CTTCAGAACG ATGCGCTGGG CCGGTCATCT GCTGACCGCG
GCCGTGTTCG TCTGGCTCGC GTTCGCGTTG ACGGTGAGTC ACGAAAACAA CCAGAACTAT
TTGTCGGCGA TTGCCGGCAA GACCTCGGCG CTCGCCGTGC ACGCCGCGGC GTACAACAAG
GCGCCGAAGG CGTCGGCGAT CGGCGGTCTG CTGGACAGAT CGAGGGATCT GCCGCGCTAC
GGCGATCTCG ATCTCGACGC GCCGGGGCTC GCTTACCGTT ATGGCCTGTA CGTCGTTCCG
GCCATCGTCA CCGCGTCCGA CACGACCTAT CTGAGCCTGC TGAAGCAGAC CTTGATGCCG
CAAATCGTGT CGCGCGTCGA AAGCGAGCTG AACACGCAGA TCGCAGCGCA AAACTCTGAC
GATGTGTACC GGACGCTGGC CATCTATCTG ATGTTGTACG ACGCCGAGCG TTACGACGCG
AAGGCCGTGC GAGCATGGGT ATTGCGTGAC TGGGAGCGCT CGGACAGCGC GGCGGCGATG
GGAGGGCGCA ATGCGATGAC GCGCCACCTG GAGGCGCTGT TCGTCGACGA ACGGCCCGTC
ACGCCGTCCA TGAAACAGGA TGCCGCGCTC GTGCAGCGGG CGCGACTCTT CCTGAGCCAG
AATCCGGCGC CGAAACGCCT CTATGAACGG GCGATCGGTG CGATGGAGAA AGAGGCACCC
GACAACTTCA CGCTCGCGCA GGCACTCGGG TTGCAGGGTG CGTCGCTCTT CAAGCTGGTG
GATGGCTCGC GCTTCGAACG AGGCGTGCCG GGGCTTTACA CGTACGACGG TTACCACGCG
CTGTTCAGTC GGCGCCTGCC GGAATTTCTG GCGCGCGCGC AGGCCGACGA CGATTGGGTC
ATGGGCCGTC CCGCCAAGCG CACCGACCTG ACCGCGTCGA TCCAGGGCAT GCGTGTCGTG
ACGTCGAGAT CGTCGCTTGC CGACGAGATT CGCCGCCAGT ATCTGATCGA TTACGGGAAC
TACTGGCAAC AGTTTCTCGC GGACATTCGG CCGGCCACCA GTGGCGAGAA TGGTCGCGAC
GGCACGCTGG CGCTCGATCA GGCGACGCTG CGCGCGCTCG CCGCGCCCGA TTCGCCGCTG
GTCAGGCTGG CGCGTGCGGT GGTCAGGGAA ACGTCGCTGT CGGTGATCAA TGCACAGGAC
CCATCGTCGC TGAACGATCT CGCGCTGACG GCGGTTGGCC GCCAATCGAC CGCGGCGCGG
ACCGCGGCGA TCGAGGCCGC GAAGATTGCC GCGCAGCGGC CCGAAACGCG GCTCGAAAAG
GAGTTCGTCG ACAACCGCTT TGCAGCGCTG CGCGAAGTCA CCACCGGACA GGCCGACACC
GGCAGCGGCC CGGCGATGAC GGACAAGCCG ATCTCCGGGG GCGGCAAGGC GTTGCAACTC
GACGCGATTC TGACGCTGAT CAACGAGCAA TACACGCGCC TCGTCGTCGC GAGCAACGCA
CTGTCGGCCA ACAGCATGCC GCCGGCGCTG GATATCGGTA CGACGTTGCA GACGGAGGCC
GAAAAGCTGC CCGCGCCATT GCAGCTCGTA CTGGGCGGCA TCGCGACGCA GGTGGCCGAC
AAGGTCGGGC AGGAGGTCGG CGGGCTGCTC GCGATGCAGG TCGATACGAG CGTCGGGCAA
AGTTGCCGGC GCACGATCGA CGGGAAATAC CCATTCGTGC GTAGCAGTCA GGAAGTCGAT
GTGGAGGACT TCAACCGGAT GTTCGCGGCG GGTGGCGTAT TCGACGAATT CTTCCAGAAA
TCGCTGGCGA GCTATGTCGA TACGAACGCA AAGCCTTGGC GCTACAAGTC GCTGAGCCCC
GGCATGCCGC CGATCAAGGG CCCGAGCCTC GCGCCGTTCG AACGCGCGGC CGCGATCCGC
GAAGTGTTCT TCCGCGATCA GGGGGCGAAG CGGATGGCGT GGAAGATGGA TGCCAAGGTG
GCCGCGATCG ATCCCGAGAT CACCGAATTG CTGATCGACA TCGACGGTCA GACGCAGCGC
TACGTGCACG GCCCTGTCAC GCCGTTCGCG CTGAGCTGGC CCGGGCCGCG CGGCGGTGCG
GTGGCCGAGA TCGCGGCAAA GCCGGCGATC CGGCCGGATA CGTCGACGAT CGTCGCGACG
GGGCCTTGGG CGCTGTTCCG GTTGATCGAG CGCGGCCGGT TGACCGGCAC GGCATCGGCC
AGCCGTCTGA CCCTCGGTTT CGATTTCGAT GGCCGGCATG CGGCGCTCGA ATTGATGACG
AGCGGCCAGT CGAATCCGCT GACGAGCAAC CTGCTCACGG GCTTTCATTG CCCGGGGGGG
CTCGCGTGA
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| Protein sequence | MSYLKRLFRW LVSWRMLACV AMLLACVAVW FLGPLFVFGE LHPFAGAVIR SIVIALLVCL
LVLWLRRWPL SPIWVIALCV ALWHVGPLFG FAEHHPLEPI WVRVLIVAAI VFCYAVYGLY
KLWQALRSND ALLKRFLEPK GDQPVEIGRD EVRAVAMVVS KAIAQLKRLR GGTLGWRRWL
EVDRHLYGLP WYMMLGTPGA GKTTAILGAG LQFPLTDQMG AMSAHDIEHT ANCDWWFANE
AVLIDTAGRY VEQDDAADET ATTINAAEWK ELLGQLRKHR PRAPLNGAIL TVSVADLVNR
SEAERTALAA SLRARLGELR QQLGIRFPVY VFVTKLDLLP GFTEYFQSLT ADGRTQIWGF
TLPCDESGEA SVDGLRRHCV HELALLEARI DAGVNNRLLE EYESDRRKRL YPLAQEFRGL
SMLVADLVEL VFLDSRYDDA QLQNMLRGVY FTSAEQTDQM VAVDRETVLQ RLKRKLARLR
TVSDTAAQAR GDGAIAGHRS FFLRNVFQHV IVPEAHLVRA DLKWEIRFRT MRWAGHLLTA
AVFVWLAFAL TVSHENNQNY LSAIAGKTSA LAVHAAAYNK APKASAIGGL LDRSRDLPRY
GDLDLDAPGL AYRYGLYVVP AIVTASDTTY LSLLKQTLMP QIVSRVESEL NTQIAAQNSD
DVYRTLAIYL MLYDAERYDA KAVRAWVLRD WERSDSAAAM GGRNAMTRHL EALFVDERPV
TPSMKQDAAL VQRARLFLSQ NPAPKRLYER AIGAMEKEAP DNFTLAQALG LQGASLFKLV
DGSRFERGVP GLYTYDGYHA LFSRRLPEFL ARAQADDDWV MGRPAKRTDL TASIQGMRVV
TSRSSLADEI RRQYLIDYGN YWQQFLADIR PATSGENGRD GTLALDQATL RALAAPDSPL
VRLARAVVRE TSLSVINAQD PSSLNDLALT AVGRQSTAAR TAAIEAAKIA AQRPETRLEK
EFVDNRFAAL REVTTGQADT GSGPAMTDKP ISGGGKALQL DAILTLINEQ YTRLVVASNA
LSANSMPPAL DIGTTLQTEA EKLPAPLQLV LGGIATQVAD KVGQEVGGLL AMQVDTSVGQ
SCRRTIDGKY PFVRSSQEVD VEDFNRMFAA GGVFDEFFQK SLASYVDTNA KPWRYKSLSP
GMPPIKGPSL APFERAAAIR EVFFRDQGAK RMAWKMDAKV AAIDPEITEL LIDIDGQTQR
YVHGPVTPFA LSWPGPRGGA VAEIAAKPAI RPDTSTIVAT GPWALFRLIE RGRLTGTASA
SRLTLGFDFD GRHAALELMT SGQSNPLTSN LLTGFHCPGG LA
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