Gene BamMC406_3001 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_3001 
SymbolhslU 
ID6177038 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp3322510 
End bp3323853 
Gene Length1344 bp 
Protein Length447 aa 
Translation table11 
GC content65% 
IMG OID641682777 
ProductATP-dependent protease ATP-binding subunit HslU 
Protein accessionYP_001809693 
Protein GI172062041 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG1220] ATP-dependent protease HslVU (ClpYQ), ATPase subunit 
TIGRFAM ID[TIGR00390] ATP-dependent protease HslVU, ATPase subunit 


Plasmid Coverage information

Num covering plasmid clones29 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.259081 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACCA TGACCCCTGC CGAGATCGTC TCGGAACTCG ACAAGCACAT CATCGGTCAG 
GCCAAGGCGA AGAAGGCCGT CGCGGTCGCG CTGCGCAACC GCTGGCGCCG GCAGCAGGTC
GGCGAGCCGC TGCGCCAGGA AATCACGCCG AAGAACATCC TGATGATCGG GCCGACGGGC
GTCGGCAAGA CCGAAATCGC GCGCCGCCTC GCGAAGCTCG CCGATGCGCC GTTCGTCAAG
ATCGAAGCGA CCAAGTTCAC CGAAGTCGGC TACGTCGGCC GCGACGTCGA CAGCATCGTG
CGCGACCTGA TCGAGATCTC GGTCAAGCAG ACGCGTGAAG CCGAGATGCG CAAGGTGCGC
AGCAAGGCGA CCGACCAGGC GGAAGACCGC ATCCTCGACA TCCTGCTGCC GCAACCGCGC
GCGGTCGGCT TCGGCGGCAA CGCCGATCAC GCGAACGACG ACAACAACGC GACGCGCCAG
ACCTTCCGCA AGCGCCTGCG CGAAGGCCAG CTCGACGACA AGGAAGTCGA GCTCGACCTC
GAGCAGCCGT CGGCCGGCAT GGACATCATG GCGCCGCCGG GGATGGAAGA GATGACCGAG
CAGATCCGCT CGATGTTCTC GAACCTCGGC AGCGGCAAGA AGCAGCGCCG CAAGGTCAAG
ATCAAGGAAG CGCTGAAGCT GCTGACCGAC GAGGAAGCGG CGAAGATGCT CAACGACGAG
GAAGTGAAGA CGAAGGCCGT GCAGAACGTC GAGCAGAACG GCATCGTGTT CCTCGACGAG
ATCGACAAGA TCACGTCGCG CAACAACGAA GGCAGCGGCG GCGAAGTGTC GCGCCAGGGC
GTGCAGCGCG ACCTGCTGCC GCTCGTCGAG GGCACGACCG TCAACACGAA GTACGGGATG
GTGAAGACCG ATCACATCCT GTTCATCGCG AGCGGCGCGT TCCACCTCGC GAAGCCGAGC
GATCTGATCC CCGAACTGCA GGGGCGCTTT CCGATCCGCG TCGAGCTCGA CTCGCTGTCG
GTGGAGGATT TCGAGGCGAT CCTCGACGCG ACCGACGCGA GCCTCGTCAA GCAGTACCAG
GCGCTGCTCG CCACGGAAGA CGTGCAACTC GAGTTCGCCG CGGACGGCAT CCGCCGCCTC
GCCGAGATCG CGTATTCGGT CAACGAGAAG ACCGAGAACA TCGGCGCACG CCGGCTGTAC
ACGGTGATCG AGAAACTGCT CGAGGAAGTG TCGTTCTCGG CCGGCAATCA CGCCGGCGAG
TGCGTGACGA TCGACGCGAC GTATGTCGAC CGCGCGCTCG GCGAAGTGGC GCAGGACGAG
GATCTGTCGC GCTACGTGCT CTAA
 
Protein sequence
MSTMTPAEIV SELDKHIIGQ AKAKKAVAVA LRNRWRRQQV GEPLRQEITP KNILMIGPTG 
VGKTEIARRL AKLADAPFVK IEATKFTEVG YVGRDVDSIV RDLIEISVKQ TREAEMRKVR
SKATDQAEDR ILDILLPQPR AVGFGGNADH ANDDNNATRQ TFRKRLREGQ LDDKEVELDL
EQPSAGMDIM APPGMEEMTE QIRSMFSNLG SGKKQRRKVK IKEALKLLTD EEAAKMLNDE
EVKTKAVQNV EQNGIVFLDE IDKITSRNNE GSGGEVSRQG VQRDLLPLVE GTTVNTKYGM
VKTDHILFIA SGAFHLAKPS DLIPELQGRF PIRVELDSLS VEDFEAILDA TDASLVKQYQ
ALLATEDVQL EFAADGIRRL AEIAYSVNEK TENIGARRLY TVIEKLLEEV SFSAGNHAGE
CVTIDATYVD RALGEVAQDE DLSRYVL