| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2917 |
|---|
| Symbol | |
|---|
| ID | 6178192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 3238076 |
|---|
| End bp | 3239230 |
|---|
| Gene Length | 1155 bp |
|---|
| Protein Length | 384 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641682693 |
|---|
| Product | porin |
|---|
| Protein accession | YP_001809609 |
|---|
| Protein GI | 172061957 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3203] Outer membrane protein (porin) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGGAG ACACCAACAA AAAGGGCAAG CTCATGAAGC AGACCACCCG ACTCGCAGCT
ATCGCAGGGG GCGCGGCGCT GGCTTTCGCC AGCCAATACG CAGCAGCACA AAGCTCGGTC
ACGCTGTGGG GCGTCGCCGA CGCCAGCATC CGTTACCTGA CCAACGCAAA CGCGAAGAAC
GACGGCCTGC TGTCGATGGC CAACGGCGCG ATCACGAACA GCCGCTTCGG CATCTACGGC
ACGGAAGACC TCGGCGGCGG CCTGAAGGCC GTGTTCAACC TCGAAAGCGG CGTCAACCTG
CAGAACGGCG GATTCGCCGA CAGCGGCCGC CTGTTCAACC GCGCAGCGTA CGTCGGCATG
CAGAGCCCGT ACGGCACGGT GACCCTCGGC CGCCAGAAGA CCCCGCTGTT CGACCTGCTG
GCGGACACCT ACGATCCGCT GACGGTCGGC AACTACCTCG AAAACGCGTG GCTGCCGGTC
GCGCTGGGTG GCGGCCTGTA TGCGGACAAC CAGATCAAGT ACACGGGCAA GTTCGCGGGC
CTGACCGCGA AGGCGATGTA CTCGACGGGC ACGAATTACG AATCGACCGG CGCGGGCGGC
TTCTCCGGCC AGATCCCGGG CTCGCTCGGC AAGGGCAATG CATGGGGCGT GTCGCTGTCG
TACGTGGCGG GGCCGCTCAG CATCGCGGCC GGCGCGCAGC AGAACAGCGA CAACTCCGCA
CGCAAGCAGA CGATCTACCA CGCGAACGTC GTGTACGCGT TCAGCAAGGC AAAGGTCTAT
GCGGGCTACC TGCGCTCGAA GGACGACACC GGTTTCGTCG ACAGCCTGCT CGCGCAGCAG
TCGATCCCGG TCGCGAAGGG CACGGGCCGG ATCGACGATG GTCCGTTCGC GGGCGTGAGC
TGGCAGGTCA GCACGCCGCT GACGCTGACG GGCGCGTTCT ACTACGACCA CATGCGCAAC
GCGATGACCA CGAACGGCAC GCTCGCGAGC GGCAACCGCT ACGCGATCGT CGGCATCGCC
GAATACGCGC TGAGCAAGCG CACGGAAGTC TACGGCACCG TCGACTTCAA CAAGACGAAC
GGCGCGGCGA ACGTCGAGCT GCCGGGTCGC AGCAACCAGA CCGGCATCGC GATCGGCCTG
CGCAATATCT TCTGA
|
|---|
| Protein sequence | MNGDTNKKGK LMKQTTRLAA IAGGAALAFA SQYAAAQSSV TLWGVADASI RYLTNANAKN
DGLLSMANGA ITNSRFGIYG TEDLGGGLKA VFNLESGVNL QNGGFADSGR LFNRAAYVGM
QSPYGTVTLG RQKTPLFDLL ADTYDPLTVG NYLENAWLPV ALGGGLYADN QIKYTGKFAG
LTAKAMYSTG TNYESTGAGG FSGQIPGSLG KGNAWGVSLS YVAGPLSIAA GAQQNSDNSA
RKQTIYHANV VYAFSKAKVY AGYLRSKDDT GFVDSLLAQQ SIPVAKGTGR IDDGPFAGVS
WQVSTPLTLT GAFYYDHMRN AMTTNGTLAS GNRYAIVGIA EYALSKRTEV YGTVDFNKTN
GAANVELPGR SNQTGIAIGL RNIF
|
|---|
| |