| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2881 |
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| Symbol | |
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| ID | 6177725 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 3201586 |
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| End bp | 3203424 |
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| Gene Length | 1839 bp |
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| Protein Length | 612 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641682657 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001809573 |
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| Protein GI | 172061921 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain
[COG2200] FOG: EAL domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.457989 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCGC CCCATCCTGA CTCGTCCGTT GCTCCCACCA CGCGCCTGAT CGCGGAGCGT
GCGCTCGCCG CCGTGTTCCA GCCGATCGTC GACCTCGGCT CGGGCACGGT CGTCGGCTAC
GAAGGCCTGA TCCGCGGCCC GCGCGGCACC GACCTCGAAC CGCCGGCCGC GCTGTTCGCG
CAGGCCGCCC GCGACGGCAC GACCATCGCG CTCGAGCAGG CGGCCGCGCT CGCCTGCCTC
GACGCGTTCG CGGCGCTCGG CTGCGACGGC AAGCTGTTCC TCAACTTCAG CGCGGGCACG
ATCGTGCAAC TCGTGCGCGA ACGCGAGCGC GCGCGGCAAC TGCTCGGCCG GGCGGGCGTC
GGCGCCGAGC GCATCGTGAT CGAGCTGACC GAGCAGACCG CGATGCCGGA CGTCGCGCGC
ATCGAACCGG CGGTCGCGTC GCTGCGCGAC GCCGGCATCC AGTTCGCGCT CGACGACTAC
GGCACCGCGA ACGCGAGCAT GAACCTGTGG TTGCGCCTGC ACCCGGATGT CGTGAAGATC
GATCGCTTCT TCATCCACGA CATCGCGCGC GACCCGCTCA AGTTCGAGGC GGTCAGGGCG
ATGCAGCACT TCGCGCACGC GAGCGGCGCG CAGCTGATCG CGGAAGGCAT CGAGAACGCG
AGCGACCTGA TCGTCGTGCG CGACATGGGC ATCTGCTGCG TGCAGGGCTT CCTGCTCGGC
CGGCCCAACG CGCGGCCGTC GCCGGTCGTC GCGCCGGCCG CGCGCGACGC GATCCGCACC
CCGCACATCG CGGTGTTCCC CGGCGCGATG CGCACCGCGC GGCCGGCCGG CACGATCGCG
GCGAAGATGC TCGTGCCCGC GCCGGCGCTG CCGCGCGATG CGACCAGCAA CGACGTGCTC
GACCTGTTCA ACCGGATGCC CGGCCTGCAC GCGGTCGCGC TCGTCGAACG CGGGCGGCCG
GTCGCGCTCG TGAACCGGCG CGGCTTCATC GACCGCTTCA CGCTGCCGTA CCACCGCGAG
GTGTTCGGGA AGAAGCCGTG CCTGCAGTTC GCAAACGACG CGCCGCTGAT GATCGACAAC
GCGACGTCGG TCGAGCAGCT CGCGATGCTG CTCGCAAGCC ACGACCAGCG CTATCTCGCG
GACGGTTTCG TGATCACCGA ACACGGCCGC TACCTCGGGC TCGGCACCGG CGAGAGCCTC
GTGCGCGCGG TGACCGAGAT GCGCATCGAG GCCGCGCGCT ACGCGAATCC GCTGACCTTC
CTGCCCGGCA ACATCCCGAT CAGCGCGCAC ATCGACCGCC TGCTGGAGCG CGACGCCGGC
TTCCATGCGT GCTACGTCGA CCTGAACCAG TTCAAGCCGT TCAACGATCA GTACGGCTAC
TGGCAGGGCG ACGAAGTGCT GAAATTCGCG GCGACGGTGC TGGCCGGCGT GTGCGATCCG
CAGCGGGATT TTCTCGGGCA CGTCGGCGGC GACGATTTCC TCGTGCTGTT CCAGCGCGAC
GACTGGCGCG CGCGGGCGAC CGACGCGATC GCGCGCTTCA ACGACGGCGC GCAGCGCTTC
TACACGCAGG CCGACCGGCT CGCAGGCGGG CTGCGCGGCG AGGACCGCCA CGGCAACCCC
GCGTTCTTCG GCTTCGTGAC GATGGCGATC GGCGCGGTCG GCGTGCCGGC AGGCGCACAC
GGCGCGATGC GCTACGGCAG CGACGAGATC GCGTCGGTCG CGGCGCTCGC GAAGCGGCGG
GCGAAACAGC AGCCGGGCGG GCTCGCGGTC GTCGATCTCG ATGCGGGCCG CGCGGCGCTG
CGCGAGCGCG GGGAGCCGCC GCTCGCGGCG GCGGGTTGA
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| Protein sequence | MPAPHPDSSV APTTRLIAER ALAAVFQPIV DLGSGTVVGY EGLIRGPRGT DLEPPAALFA
QAARDGTTIA LEQAAALACL DAFAALGCDG KLFLNFSAGT IVQLVRERER ARQLLGRAGV
GAERIVIELT EQTAMPDVAR IEPAVASLRD AGIQFALDDY GTANASMNLW LRLHPDVVKI
DRFFIHDIAR DPLKFEAVRA MQHFAHASGA QLIAEGIENA SDLIVVRDMG ICCVQGFLLG
RPNARPSPVV APAARDAIRT PHIAVFPGAM RTARPAGTIA AKMLVPAPAL PRDATSNDVL
DLFNRMPGLH AVALVERGRP VALVNRRGFI DRFTLPYHRE VFGKKPCLQF ANDAPLMIDN
ATSVEQLAML LASHDQRYLA DGFVITEHGR YLGLGTGESL VRAVTEMRIE AARYANPLTF
LPGNIPISAH IDRLLERDAG FHACYVDLNQ FKPFNDQYGY WQGDEVLKFA ATVLAGVCDP
QRDFLGHVGG DDFLVLFQRD DWRARATDAI ARFNDGAQRF YTQADRLAGG LRGEDRHGNP
AFFGFVTMAI GAVGVPAGAH GAMRYGSDEI ASVAALAKRR AKQQPGGLAV VDLDAGRAAL
RERGEPPLAA AG
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