| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2709 |
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| Symbol | |
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| ID | 6178906 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 3007376 |
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| End bp | 3008881 |
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| Gene Length | 1506 bp |
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| Protein Length | 501 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641682485 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_001809402 |
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| Protein GI | 172061750 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.0191424 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAGCCA GCCTTCAACT CCGCCTGTCG CAACACCTGG CGCTGACCCC GCAACTGCAG
CAGTCGATCC GGCTCCTGCA ACTGTCGACG CTCGAACTGC AGCAGGAAGT CGCGATGGCC
GTCGCGCAAA ATCCGTTGCT CGAAAACGAA GACGAATGGA TCACGAGTCC GCTGCGTGTC
GCGTCGGACG GATCGCTGAT CGCACAGGGG CCTTCCGGAC AGAACATCGA GCCGGGCCCC
GCGAGCGGCA GCAGCCCGTC GAGCGAGCGC GCCGAGCGCG ACGAGCCGGC CGGCGCCGAC
GAATACGACG GCTACGGGTC CGGCGAGGCC GGCGACGGCC CGCAGTGGAA TCTTGACGAG
TACGGCCGCT CGAGCGGCGC GTCGGACGAT GACGACCTCC CGCCGCTGCA GGTGCAGGAA
GCCGCGACGT CGCTGCGCGA CCACCTGTCC GCGCAGTTGC GCATGACGCA GGCCAGCCCG
CGCGATCGCG CACTCGTGAT GTTCCTGATC GAATCGCTCG ACGACGACGG CTACCTGACC
GCGTCGCTCG ACGAAGTGCT CTCCGACCTG CCGCCGGAAC TGGAAGTCGA CTGCGACGAA
CTGAATGCGG CGCTCGCGCT GCTGCACAGC TTCGACCCGG CCGGGGTCGG GGCCCGCTCG
GCCTCCGAAT GCCTGAAGCT GCAGTTGCTG CGCCTCGATC CGTCCCCCAC CCGCACGCTC
GCACTGGAGA TCGTGTCGCA GCACCTCGAG CTGCTCGCGG CGCGCGACTT CACGCGGCTG
CGCAAGCACC TGAAGGCGAG CGACGACGCG CTGCGCGACG CGCACGCGCT GATCCGCTCG
CTGGAGCCGT TCCCAGGCGC CGCGTACGGC AAGGCCGAGG CCGACTACGT CGTGCCCGAC
ATCATCGTGA AGAAGGCCGG CCAGGGCTGG CTCGCGGAAC TCAATCCTGA AGTGATGCCG
CGCCTGCGGA TCAACAACCT GTACGCGAAC ATCCTGCGCA ACAGCCGCGG CGATCCGTCG
GCCGGGTCGC TCAAGCAGCA GCTCCAGGAA GCACGCTGGC TGATCAAGAA CATTCAGCAG
CGATTCGACA CGATCCTGCG TGTCGCGCAG GCCATTGTCG AACGTCAAAA GAATTTCTTC
GCGCATGGTG AAATCGCCAT GCGCCCCTTG GTTTTGCGGG AAATAGCTGA TACGCTGGGC
CTACACGAGT CGACTGTCAG CCGTGTGACA ACAGGCAAGT ACATGCTGAC CCCGTTCGGT
ACGCTGGAAT TCAAGTACTT CTTCGGGTCA CACGTTTCGA CCGACACCGG AGGCGCCGCA
TCGTCGACCG CCATCCGAGC CCTGATCAAG CAACTGATAG GAGCTGAAGA CCCAAAATCG
CCACTTTCGG ACAGCCGCAT TGCCGAGCTG CTGGCAGAAC AGGGTTTCGT GGTTGCGCGC
CGCACGGTTG CCAAGTATCG CGAAGCCCTC AAAATCCCGG CAGTGAATCT GCGCAAGTCT
CTTTAG
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| Protein sequence | MKASLQLRLS QHLALTPQLQ QSIRLLQLST LELQQEVAMA VAQNPLLENE DEWITSPLRV
ASDGSLIAQG PSGQNIEPGP ASGSSPSSER AERDEPAGAD EYDGYGSGEA GDGPQWNLDE
YGRSSGASDD DDLPPLQVQE AATSLRDHLS AQLRMTQASP RDRALVMFLI ESLDDDGYLT
ASLDEVLSDL PPELEVDCDE LNAALALLHS FDPAGVGARS ASECLKLQLL RLDPSPTRTL
ALEIVSQHLE LLAARDFTRL RKHLKASDDA LRDAHALIRS LEPFPGAAYG KAEADYVVPD
IIVKKAGQGW LAELNPEVMP RLRINNLYAN ILRNSRGDPS AGSLKQQLQE ARWLIKNIQQ
RFDTILRVAQ AIVERQKNFF AHGEIAMRPL VLREIADTLG LHESTVSRVT TGKYMLTPFG
TLEFKYFFGS HVSTDTGGAA SSTAIRALIK QLIGAEDPKS PLSDSRIAEL LAEQGFVVAR
RTVAKYREAL KIPAVNLRKS L
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