| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2627 |
|---|
| Symbol | pdxA |
|---|
| ID | 6176358 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 2915461 |
|---|
| End bp | 2916450 |
|---|
| Gene Length | 990 bp |
|---|
| Protein Length | 329 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 641682403 |
|---|
| Product | 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| Protein accession | YP_001809320 |
|---|
| Protein GI | 172061668 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1995] Pyridoxal phosphate biosynthesis protein |
|---|
| TIGRFAM ID | [TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.10934 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGGCAT CCGCGCTGCA GATCGCGATC ACGACGGGCG AACCCGCGGG TGTCGGCCCG
GAGCTGACCG TGCAGGCGTT GCAGGATGCC GCGCGGCGCT GGCCCGGCGC GCATTTCACC
GTGCTCGGCG ACGCCGCGCT GCTCGACGCG CGCGCGACGG CCGTCGGGGC CGACCGGGCG
GTGCTCGCCG GCGGCGGCCC CGTGTCGGTC GAGCATCATC CGCTCGCCGC GCCCGCGCAG
GCGGGCAAGC TCGACGCGGC CAACGGCCGC TACGTGCTCG GACTGCTCGA TGCCGCGATC
GACGGCGCGC TGGCGGGCCG GTTCGACGCG ATCGTCACCG CGCCGCTGCA GAAGAGCACG
ATCAACGATG CCGGCGTGCC GTTTACCGGC CATACCGAAT ACCTGGCGGA GCGCACGCAC
ACGCCGCGCG TCGTGATGAT GCTGGCGGGC ACGGGCGAGC GGCCGCTGCG CGTCGCGCTC
GCGACCACGC ACCTGCCGCT GAAGGACGTA TCGGCCGCGC TGACGATCGA CGGGCTCGTC
GAGACGCTCG CGATCATCGA TCGCGATCTG CGGCGCGACT TCGGTCTCGC GGCGCCGCGC
ATCCTCGTGA CGGGGCTGAA CCCGCACGCG GGCGAGAACG GCTATCTCGG GCGCGAGGAG
ATCGACGTGA TCTCGCCGGC GCTCGCACGC GCGCAGGCGC AGGGCATCGA CGCGCGCGGC
CCGTATCCGG CCGACACGCT GTTCCAGCCG CGCCATCTCG AGGGCGCCGA TTGCGTGCTC
GCGATGTTCC ACGATCAGGG CTTGCCCGTG CTGAAGTATG CGACGTTCGG CGAGGGCATC
AACGTCACGC TCGGGCTGCC GATCATCCGC ACGTCGGTCG ATCACGGCAC CGCGCTGGAT
CTGGCCGGCA CGGGCCGCGC GGATCCGGGC AGCATGGTCG CCGCCCTCGA CACGGCCGTC
GCGATGGCGC GCCATCGCCG CGCGTCGTGA
|
|---|
| Protein sequence | MTASALQIAI TTGEPAGVGP ELTVQALQDA ARRWPGAHFT VLGDAALLDA RATAVGADRA
VLAGGGPVSV EHHPLAAPAQ AGKLDAANGR YVLGLLDAAI DGALAGRFDA IVTAPLQKST
INDAGVPFTG HTEYLAERTH TPRVVMMLAG TGERPLRVAL ATTHLPLKDV SAALTIDGLV
ETLAIIDRDL RRDFGLAAPR ILVTGLNPHA GENGYLGREE IDVISPALAR AQAQGIDARG
PYPADTLFQP RHLEGADCVL AMFHDQGLPV LKYATFGEGI NVTLGLPIIR TSVDHGTALD
LAGTGRADPG SMVAALDTAV AMARHRRAS
|
|---|
| |