| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2617 |
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| Symbol | |
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| ID | 6176357 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 2905527 |
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| End bp | 2907164 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 641682393 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001809310 |
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| Protein GI | 172061658 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACGATT CGAACGACTT CCTCATTCCG CTGATCCCGC CGCTGCTCGC CATGCTCGGG
CAGGCCGCCG ACGCGCACGC GCGCGGCGAG CACGATGCGC ACGCGCTGTG GCTTGCCGCC
GCCGGCCATC TGCACGCGGT CGACATGGCC GCGCTCGCAC AGCTCACGTC GGCGCTCGTC
GCGCGACAGC GCACGGCCGA CGCGCTCGCG CTGGCCGAAC GCGCGGTGCG CGTGCATCCG
GGCGCCGATG CCCGTTTCAA TCACGGCTAT GTGCTGCAGA TGCTCGGCCG TCACGCCGAG
GCCGTCGCGC CGTATCGCGC CGCCTATGCG CTCGATCCGC GCTGGCCCTC GCTGCGCAAC
AACCTCGCGA TCGCGCTGCG GCTGTCGGGT GGCGACCGCA ACGAGGAAAT CGCGCTGCTC
GACGCGGCCG TGGAGGCCGA TCCGCTCGAC GTGCAGGCGT GGATCAACCT GGTCGTCGCG
CGGCTCGCGG CACAGGATCT CGACGGCGCG CTCGCCTGCG CGGCGCGGCT CGCGCAGATC
GCGCCCGACA ATGCGCTCGC GCTGAACAAC ATCGCGATGG CGATGAAGGA AGCGCAGCGC
TGGGACGACG CCGAGCGCTA CGCGGCGCGT GCATGCCAGC TGGCGCCCGA CGACGCGTCG
TTCCGTTTCA ACCTCGCGAT CATCCAGCTC GTGCGCGGCA ACTACGCGGC CGGCTGGCGC
GGCCACGAGG CGCGCTGGGA CGGTGCGGGC GAGTTGCGCG GCCGCCGGCC GGCGCTGCCG
GGCCCGCGCT GGCAGGGCGA GCCGCTCGCG GGCAAGACGC TGCTCGTGTG GGGCGAGCAG
GGGCTCGGCG ACGTGCTGCA GTTCGCGCGC TTCGTCGCGC CGCTCGCCGA GCGCGTGCAC
CGCGAGGGCG GCCGGCTCGT GTGGAACACG TTTCCGCAGG TGGGCACGCT GATGCAGCGC
AGCCTCGGTG CGCATGCGGA CGCCTTCAGC GCGGGCGGCA GCGTCGACGA ACTGCCCGCC
TTCGACTACG AAGTGCCGTT GATCGGGCTG CCGCTGATGC TCGGGATGGA GACGTCGACG
CTTGGCGAGT CGGTGCCGTA CCTGCATGCC GACCGCCACG CGCGCGATGC GTGGCGCGCG
CGGCTCGCGG GCGATGGCCG GTTGAACGTC GGGCTCGTCT GGACGGGCAG TGCGGGACAC
CAGCGCAATC CGTTCCGGCG CGTCGGGCTC GATCGCTACG CCGATGCATT TCGCGGTATC
GACGGCGTCA CGTTCCATTC GCTGCAGCCG GGCGCGGATG CGGATGTCGC CGCGGCGCGC
GCGGCCGGTT TCGCGATCAA GGACTACACG GCCGAACTGA AGAGTTTCGA CGATACGGCC
GCGTTCATCG GCGCGCTGGA TCTGGTGATC ACCGTGTGCA CGTCGGTCGC GCATCTGGCG
GGCGCGCTGG GCGCGCGCAC CTGGGTGCTG CTCGACGTGA ATCCGCACTG GCCGTGGCTG
CTCGAACGCA CCGACAGCCC GTGGTATCCG ACCGCCACGC TGTACCGGCA GCCGACGTTC
GGCGCGTGGG CGCCGGTGAT GGCGGCGCTG GGGCGGGATC TGCGCGGCCT GGCCGCGCAG
GCGAAGCGGC CGGCCTGA
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| Protein sequence | MDDSNDFLIP LIPPLLAMLG QAADAHARGE HDAHALWLAA AGHLHAVDMA ALAQLTSALV
ARQRTADALA LAERAVRVHP GADARFNHGY VLQMLGRHAE AVAPYRAAYA LDPRWPSLRN
NLAIALRLSG GDRNEEIALL DAAVEADPLD VQAWINLVVA RLAAQDLDGA LACAARLAQI
APDNALALNN IAMAMKEAQR WDDAERYAAR ACQLAPDDAS FRFNLAIIQL VRGNYAAGWR
GHEARWDGAG ELRGRRPALP GPRWQGEPLA GKTLLVWGEQ GLGDVLQFAR FVAPLAERVH
REGGRLVWNT FPQVGTLMQR SLGAHADAFS AGGSVDELPA FDYEVPLIGL PLMLGMETST
LGESVPYLHA DRHARDAWRA RLAGDGRLNV GLVWTGSAGH QRNPFRRVGL DRYADAFRGI
DGVTFHSLQP GADADVAAAR AAGFAIKDYT AELKSFDDTA AFIGALDLVI TVCTSVAHLA
GALGARTWVL LDVNPHWPWL LERTDSPWYP TATLYRQPTF GAWAPVMAAL GRDLRGLAAQ
AKRPA
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