Gene BamMC406_2478 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_2478 
SymbolxerD 
ID6178363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp2753567 
End bp2754535 
Gene Length969 bp 
Protein Length322 aa 
Translation table11 
GC content70% 
IMG OID641682254 
Productsite-specific tyrosine recombinase XerD 
Protein accessionYP_001809172 
Protein GI172061520 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID[TIGR02225] tyrosine recombinase XerD 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.0183983 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTGAAC CGTTGCTTTC CCCCGACTCC GCGTCCGACA CCGATACCGC TGGCGACGCG 
GCCGCCGCAT CGCCCGTGCT GCTCGCGAGC CGCGCGTCGA TCGACGTGTT CTGCGATGCG
CTGTGGCTCG AACACGGGCT CGCGCGCAAT ACGCTCGATG CGTACCGGCG CGATCTGGTG
CTGTTTTCGC AATGGCTGGC CGCGATGCAC GACGCGCCGC TCGACTCGGC CGACGAAGCG
ATGTTGATCG GCTACATCGC CGCGCGCAGC GACGGCAAGG CGACATCGTC GAACCGGCGC
TTGTCGGTGT TCCGGCGCTA TTACGGCTGG GCCGTGCGCG AGCATCGCGC GAATGCGGAC
CCGACGCTGC GGATCACGTC GGCGAAGCAG GCCGCGCGGT TTCCGTCGAC GCTGTCCGAG
GCGCAGGTCG AGGCGCTGCT CGGTGCACCC GACGTCGGCA CGCCGCTCGG CCTGCGCGAT
CGCACGATGC TCGAGCTGAT GTATGCAAGC GGGCTGCGCG TGAGCGAGCT CGTCACGCTG
AAGACCGTCG AGGTCGGGCT CAACGAGGGC GTCGTGCGCG TGATGGGCAA GGGCTCGAAG
GAACGGCTCG TGCCGTTCGG CGAAGTCGCG CACGGCTGGA TCGAGCGCTA CCTGCGCGAC
GCGCGGCCGG CGCTGCTCGG CGCACGCGCG GCCGACGCGC TGTTCGTGAC CGCGCGCGGC
GACGGGATGA CGCGCCAGCA GTTCTGGAAC ATCATCAAGC GTCACGCGCA GCAGGCCGAC
GTGCGCGCGC ACCTGTCGCC GCATACGCTG CGGCACGCGT TCGCGACGCA CCTGCTGAAC
CACGGCGCCG ACCTGCGCGT CGTGCAGCTG CTGCTCGGTC ACAGCGATAT CTCGACCACG
CAGATCTACA CGCACGTCGC GCGCGAGCGG CTCAAGACGC TGCACGCGAC GCACCATCCG
CGCGGCTAG
 
Protein sequence
MSEPLLSPDS ASDTDTAGDA AAASPVLLAS RASIDVFCDA LWLEHGLARN TLDAYRRDLV 
LFSQWLAAMH DAPLDSADEA MLIGYIAARS DGKATSSNRR LSVFRRYYGW AVREHRANAD
PTLRITSAKQ AARFPSTLSE AQVEALLGAP DVGTPLGLRD RTMLELMYAS GLRVSELVTL
KTVEVGLNEG VVRVMGKGSK ERLVPFGEVA HGWIERYLRD ARPALLGARA ADALFVTARG
DGMTRQQFWN IIKRHAQQAD VRAHLSPHTL RHAFATHLLN HGADLRVVQL LLGHSDISTT
QIYTHVARER LKTLHATHHP RG