Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_2478 |
Symbol | xerD |
ID | 6178363 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 2753567 |
End bp | 2754535 |
Gene Length | 969 bp |
Protein Length | 322 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 641682254 |
Product | site-specific tyrosine recombinase XerD |
Protein accession | YP_001809172 |
Protein GI | 172061520 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG4974] Site-specific recombinase XerD |
TIGRFAM ID | [TIGR02225] tyrosine recombinase XerD |
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Plasmid Coverage information |
Num covering plasmid clones | 26 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.0183983 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGTGAAC CGTTGCTTTC CCCCGACTCC GCGTCCGACA CCGATACCGC TGGCGACGCG GCCGCCGCAT CGCCCGTGCT GCTCGCGAGC CGCGCGTCGA TCGACGTGTT CTGCGATGCG CTGTGGCTCG AACACGGGCT CGCGCGCAAT ACGCTCGATG CGTACCGGCG CGATCTGGTG CTGTTTTCGC AATGGCTGGC CGCGATGCAC GACGCGCCGC TCGACTCGGC CGACGAAGCG ATGTTGATCG GCTACATCGC CGCGCGCAGC GACGGCAAGG CGACATCGTC GAACCGGCGC TTGTCGGTGT TCCGGCGCTA TTACGGCTGG GCCGTGCGCG AGCATCGCGC GAATGCGGAC CCGACGCTGC GGATCACGTC GGCGAAGCAG GCCGCGCGGT TTCCGTCGAC GCTGTCCGAG GCGCAGGTCG AGGCGCTGCT CGGTGCACCC GACGTCGGCA CGCCGCTCGG CCTGCGCGAT CGCACGATGC TCGAGCTGAT GTATGCAAGC GGGCTGCGCG TGAGCGAGCT CGTCACGCTG AAGACCGTCG AGGTCGGGCT CAACGAGGGC GTCGTGCGCG TGATGGGCAA GGGCTCGAAG GAACGGCTCG TGCCGTTCGG CGAAGTCGCG CACGGCTGGA TCGAGCGCTA CCTGCGCGAC GCGCGGCCGG CGCTGCTCGG CGCACGCGCG GCCGACGCGC TGTTCGTGAC CGCGCGCGGC GACGGGATGA CGCGCCAGCA GTTCTGGAAC ATCATCAAGC GTCACGCGCA GCAGGCCGAC GTGCGCGCGC ACCTGTCGCC GCATACGCTG CGGCACGCGT TCGCGACGCA CCTGCTGAAC CACGGCGCCG ACCTGCGCGT CGTGCAGCTG CTGCTCGGTC ACAGCGATAT CTCGACCACG CAGATCTACA CGCACGTCGC GCGCGAGCGG CTCAAGACGC TGCACGCGAC GCACCATCCG CGCGGCTAG
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Protein sequence | MSEPLLSPDS ASDTDTAGDA AAASPVLLAS RASIDVFCDA LWLEHGLARN TLDAYRRDLV LFSQWLAAMH DAPLDSADEA MLIGYIAARS DGKATSSNRR LSVFRRYYGW AVREHRANAD PTLRITSAKQ AARFPSTLSE AQVEALLGAP DVGTPLGLRD RTMLELMYAS GLRVSELVTL KTVEVGLNEG VVRVMGKGSK ERLVPFGEVA HGWIERYLRD ARPALLGARA ADALFVTARG DGMTRQQFWN IIKRHAQQAD VRAHLSPHTL RHAFATHLLN HGADLRVVQL LLGHSDISTT QIYTHVARER LKTLHATHHP RG
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