| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2369 |
|---|
| Symbol | cobT |
|---|
| ID | 6178605 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 2639049 |
|---|
| End bp | 2640161 |
|---|
| Gene Length | 1113 bp |
|---|
| Protein Length | 370 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 641682143 |
|---|
| Product | nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|---|
| Protein accession | YP_001809063 |
|---|
| Protein GI | 172061411 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG2038] NaMN:DMB phosphoribosyltransferase |
|---|
| TIGRFAM ID | [TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.478128 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 30 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTCC TTCTTTCGAT GCGCGGCACC GGCCGCGCCA ACGAGGCAAA CCTTCCGATG
ACGAATCCGA CCGACTTCCC GCCCGCGATC GCGCCGCTCG ACGACGCGCT GCGCAAGCGC
CTGCAGCATG TGATCGATCA CAAGACCAAG CCGCCCGGCA GCCTCGGCCA GCTCGAGGCG
ATCGCGTTGC AGATCGGCCT GATCCAGCGC ACCGAGCGGC CGCACGTGCA GCGTCCCGTG
ACGATCGTGT TCGCCGGCGA CCACGGGATC GCGGCCGAGG GCGTGAGCCC GTATCCGCAG
GCGGTCACCG CGCAGATGGT CGCGAACTTC CTGGCCGGCG GCGCGGCGAT CAATGCGTTC
TCGGGTGTCG CGCAGTGCGT GCTCGAGATC GTCGACGCGG GCGTCGCGTC GCCGCTGCCG
GTATCCGACC GGCTCGTGTC GCTGCCGGTT GCGCGCGGCA CGCGCAACTT CGCGGCCGAA
CCCGCGATGA CGCGCGACGA GGCGGCGACG GCGCTCGCGG CCGGTGCCGC GCGCGTGCGC
CTGCACGCGT CGCTCGGCAC GAACGTGATC GGCTTCGGCG AAATGGGGAT CGCGAACACG
TCGTCGGCCG CGTGCCTGAT GAGCCGCCTG CTCGACGTGC CGATCGACGC GTGCGTGGGG
CGCGGCACCG GCCTCGACGA CCAGGGGCTC GCGCACAAGC GCGCGGTGCT CGGCCGCGCG
CTGGTCCGGC ATTCGCACGC GATCGCGCCG CTCGACGTGC TCGCGACGTT CGGCGGCTTC
GAGATCGCGA TGATGACGGG CGCGTATCTC GCGGCCGCGA GCGAGCGGAT GACGATCCTC
GTCGACGGCT TCATCGCGAC GGCGGCGCTG CTCGTCGCCG AGCGCATCGC GCCCGGGGTG
CGCGACTACT GCGTGTTCTC GCATGCGTCG CACGAGGCCG GCCACCGGCG CATGCTCGAG
CATTTCGGTG CGAAGCCGCT GCTCGCGCTC GACCTGCGGC TCGGCGAAGG CACGGGCGCC
GCGCTCGCGC TGCCGCTGGT GCGCGCGGCC GCCGCGTTCC TCACCGAGAT GGCGAGCTTC
GAATCCGCGG GCGTCGACAA TCGTGACGCC TGA
|
|---|
| Protein sequence | MNFLLSMRGT GRANEANLPM TNPTDFPPAI APLDDALRKR LQHVIDHKTK PPGSLGQLEA
IALQIGLIQR TERPHVQRPV TIVFAGDHGI AAEGVSPYPQ AVTAQMVANF LAGGAAINAF
SGVAQCVLEI VDAGVASPLP VSDRLVSLPV ARGTRNFAAE PAMTRDEAAT ALAAGAARVR
LHASLGTNVI GFGEMGIANT SSAACLMSRL LDVPIDACVG RGTGLDDQGL AHKRAVLGRA
LVRHSHAIAP LDVLATFGGF EIAMMTGAYL AAASERMTIL VDGFIATAAL LVAERIAPGV
RDYCVFSHAS HEAGHRRMLE HFGAKPLLAL DLRLGEGTGA ALALPLVRAA AAFLTEMASF
ESAGVDNRDA
|
|---|
| |