| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2341 |
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| Symbol | |
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| ID | 6178245 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 2606430 |
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| End bp | 2608880 |
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| Gene Length | 2451 bp |
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| Protein Length | 816 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641682115 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_001809035 |
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| Protein GI | 172061383 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.194794 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCCCGTTC CGACGACGCG CACGGCCCTC CAGGCTGCCG GCCCCGCACG ATACGCGCGG
CCCGCCGCAG CGGCGCTTGC ACTGGCGCTG GCACTGCGTG CAGGCACCGC CTGCGCGCAA
ACGGCGCCGG TGCAGGTGAC AGCTGCGCCC GTGCTGGTGC CGGTGCCCGT ACCCGTACCC
GTGCCTGCGC CCATGCCTGC GCCCGTGCCC GCGCCGGCGC CCTCGCCCGC ATCCGACGCA
CTGTTTCTCG ACGTATCGGT CAATGGCGAA CCCACGCACC GGATCGCACG CTTCCAGCAA
ATCGGCGGAC GCCTGTACGC GGCCTCCGCC GACCTGAACG ACCTGGGTAT CGCGACGAAC
GACCGGACGA ACAACCGCAC GCCGGAGCCG TCGAACGCGC TCGTCGCGCT CGACACGCTC
GCCGGGCTGC GCTACGACTA CGACGCGGGC CGGCAGACGC TCGACCTGCG CGTGCCCGAT
GCGCTGCGCA TCCCGCACAC GTTCGATACG CGCGCACTCG CGGCCGCGCC GCCCGCCTCG
TCCGGCCGCG GCTTCGTACT GAACTACGAC GCCTACGCGC AGACCATCGC CCATGCGCCG
CTCGCGGTCT GGAGCGAGGC GCGCTATTTC GATCCGTACG GCGTATTCAG CAGCACCGGC
GTCGCGTATC TGTACGACGA CCGCCGGCGC TACGTGCGCT ACGACACGTC GTGGAGTCAT
TCGAACCCCG GCACGCTCAC GACGACCCAG ATCGGCGACA CGATTTCGTC GTCGTTGTCG
TGGACCCGCT CGCTGCGCAT CGGCGGCGTG CAGTGGCGCA GCAACTTCGG CCTGCGCCCC
GATCTGGTCA CGTTTCCGGT GCCCGCGCTG TCCGGCAGCG CGGTCGTGCC GACCTCGGTC
GACCTGTACG TGAACAACGT GCGCCAGTTC AGCGGCAACG TGGCGAGCGG GCCGTTCGTG
ATCAACAGCG TGCCCGGCAT CACCGGCGCG GGCAACGCGA CGGTCGTCAC GCGCGACGCG
CTCGGCCGCT CGATCGCGAC GTCCATTCCG CTGTACGTCG ACACGCGCCT GCTCGCCCCC
GGCCTCGCCA GCTATTCGGC GGAAGCCGGG TTCCTGCGCC GCGCCTATGG CATCGATTCG
TTCGACTACG CGCGCACGCC GGCCGCGAGC GGCTCGCTGC GCTACGGCGT CAGCGAGCGG
CTGACCGTCG AGGCGCACGC GGAAGCAACG GCCGGCGTCT ACAACGCGGG CGCCGGCGCG
CTCGCACGTC TGGGCGAACG CGGCGTGGCG AACGCGTCGC TGGCGCTCAG CGCGCCGGGC
CGCACGGGCG TGCAGGCCGG CATCGGCTAC CAGTACGTGA CGCCGCGCTT CTCCATCGAT
GCGCAGACGC TGCGCGCCTT CGGCGACTAC AGCGACCTCG GCAGCCGCGA AGGCGTGCCG
GTGTCGCGCG CCACCGACCG CGTCACGGTC TCATTCCCGT TCCTGCGCAG GCAGACGCTG
TCGTTCAGCT ATCTCGGCCT CAAGTATCCG GGCGTCGCCG CGTCGCGCAT CGGCTCGGTC
GCGTACCTGG TCAATCTCGG CGGGCTGACC TCGATCACGT TCAGCGGCTT CCAGGACTTC
CGGCAGCGCG ACACGCGCGG CTTCTTCGTG AGCCTGAGCA TCGGGCTCGG CGGCAACACG
TCCGTGTCGG TGAACGCCGG GCGGCAGAAC GGCGACTCGA CCTACACGCT GAGCGCGACA
CGGCCGCCCG ACTATGGCGG CGGCGTCGGC TGGAACGTGC AGGCGGGCGC CAACGCAGGC
ATGCGCTACG CGCAGGGGCA GCTGCAGTAT CTCGGCCGCG CGGGCGAGGT CACGCTGCTC
GCGCAGTCGT TCGACGAGCA CCGCAACGCG TCGGTCGACG TCACGGGCGC GATCGTGCTG
ATGAACGGCC AGCTGATGAC GGCACGCCGC GTCGACGACG GCTTCGCGCT CGTCTCGACC
GACACCGGGC GCGTGCCCGT ACTGCACCAG AACCGGATGA TCGGCGAGAC GAACCGGGCC
GGCTACCTGC TCGTGCCCGA CCTGAATGCG TACCAGAGCA ATCGCGTCGC GATCGACGGC
ACCGCGCTGC CCGCCGACGC CCGGATCGCC GACACGACGC TCGACGTCGT GCCGCAGGCG
CGCTCCGGCG TGCTCGCGCA CTTCGCCGTG ACACGCTACA GCGCCGCGTC GATCGCGCTG
CGCGCGCCGG ACGGCACGCC GCTGCCGCCC GGGCTCGAGG TTCGCCACGT CGAAAGCGGT
CAGCGCACGA TCGTCGGCTA CGACGGCCTG ACCTTCGTCG ACGGCCTCGT CGCGAACAAC
CATCTGGAAA TCACCGGCGG CGGCCGCGAT TGCGCCGTCG CGTTCGCGTA CCGGCGCCCG
GACGACGGCA CGCTGCCGCG GATCGGCCCG CTGACCTGCG GCCCGCGGTG A
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| Protein sequence | MPVPTTRTAL QAAGPARYAR PAAAALALAL ALRAGTACAQ TAPVQVTAAP VLVPVPVPVP
VPAPMPAPVP APAPSPASDA LFLDVSVNGE PTHRIARFQQ IGGRLYAASA DLNDLGIATN
DRTNNRTPEP SNALVALDTL AGLRYDYDAG RQTLDLRVPD ALRIPHTFDT RALAAAPPAS
SGRGFVLNYD AYAQTIAHAP LAVWSEARYF DPYGVFSSTG VAYLYDDRRR YVRYDTSWSH
SNPGTLTTTQ IGDTISSSLS WTRSLRIGGV QWRSNFGLRP DLVTFPVPAL SGSAVVPTSV
DLYVNNVRQF SGNVASGPFV INSVPGITGA GNATVVTRDA LGRSIATSIP LYVDTRLLAP
GLASYSAEAG FLRRAYGIDS FDYARTPAAS GSLRYGVSER LTVEAHAEAT AGVYNAGAGA
LARLGERGVA NASLALSAPG RTGVQAGIGY QYVTPRFSID AQTLRAFGDY SDLGSREGVP
VSRATDRVTV SFPFLRRQTL SFSYLGLKYP GVAASRIGSV AYLVNLGGLT SITFSGFQDF
RQRDTRGFFV SLSIGLGGNT SVSVNAGRQN GDSTYTLSAT RPPDYGGGVG WNVQAGANAG
MRYAQGQLQY LGRAGEVTLL AQSFDEHRNA SVDVTGAIVL MNGQLMTARR VDDGFALVST
DTGRVPVLHQ NRMIGETNRA GYLLVPDLNA YQSNRVAIDG TALPADARIA DTTLDVVPQA
RSGVLAHFAV TRYSAASIAL RAPDGTPLPP GLEVRHVESG QRTIVGYDGL TFVDGLVANN
HLEITGGGRD CAVAFAYRRP DDGTLPRIGP LTCGPR
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