| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2226 |
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| Symbol | |
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| ID | 6178121 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 2476392 |
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| End bp | 2478173 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641681999 |
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| Product | lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA |
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| Protein accession | YP_001808921 |
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| Protein GI | 172061269 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1132] ABC-type multidrug transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR02203] lipid A export permease/ATP-binding protein MsbA |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.472493 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGAAACCC AGAACACTCT TCGCAAACCG ATGGACGGCA CGGGCACGTC GCCGTTCACG
GTTCTCAAGC GCCTGTGGCC GTACATCCGG CCGCTGATCG GCATCGTGGT GCTCGCCGTC
GTCACGATGG GCGTCGTCGC GGCCACCGAA GCCGGGATTC CGGCGCTGCT CAAGCCGCTG
CTCGACCATG GCTTCGGCTC GCACGGCAGC GACCGCGCGA AATGGTACGT GCCGATGGCC
GTGATCGGCC TCGCGCTCGT ACGCGGCGTG TCGCAGTACG CGTCGAATTA CCTGCTCAAC
TACGTATCGA ACCGCATCCT GCTGCAACTG CGGCTCGAAA TGTTCCAGCG GATGCTGCAC
ACGGGCGCGT CGTTCTTCCA GCGCGAGACG GCGAGCACGG TGATCAACGC GATCGTGTTC
GAGGTCAACC AGATCCTGGC GGTGCTGACC GGCGTGATGG TCACGCTCGT GCGCGACTCG
CTGACCGTGA TGTTCCTGCT CGGCTACCTG TTCTACCTGA ACTGGCGGCT CACGCTGATC
GTCGCGGTGA TCCTGCCGGG CATCGGCTGG CTCGTCAGCA AGATCAACCG CCGCCTGCGC
CGCCTGAACC GCGAGCACCA GACGCTGACC AACGAGCTGT CGTACATCGT CGAGGAGACG
GTCGGCGGCT ACAAGGTCGT CAAGGTGCAC AACGGCGAGA CGTACGAGAT GGACCGCTTC
ACCGCGATGA GCAAGCGCCT GCGCGGCTAC GCGATGCGCA TGACGATCTC GGGCGGGCTC
GCGCAACCGT TGACGCAGTT CCTCGCGTCG ATCGCGCTCG CGGTCGTGAT CACGATCGCG
GTCGTGCAGT CGACCAACGA TCAGACGACG GTCGGCGGCT TCGTCGCGTT CGTCACGTCG
ATGCTGCTAG TGATTTCGCC GCTCAAGCAC CTGATCGACG TGAACCAGCC GCTGCAGCGC
GGGATGACGG CCGCCGAGCT GATCTTCGGG CTGATCGACG AGCCGGGCGA GCCGCAGGGC
GGCGGCCGTG CGCTGCCGCA TGCGCGCGGC GAGATCGAGT TCCGCGGCGT GTCGTTCGAC
TACGGCGCAT CCGAGCGGCC GACGCTCGAC CGCATTTCGT TCAAGGTCGC GCCGGGCGAA
ATGATCGCGC TCGCGGGGCC GTCGGGCAGC GGCAAGACGA CCCTCGTGAA CCTGCTGCCG
CGCTTCTTCG ATCCCACGGG CGGCGCGATC CTGGTCGACG GCGTGCCGGT GGCCGACTAC
GACCTCCACG CGCTGCGCGG CCAGATGGCG ATGGTCAGCC AGGACGTCGT GCTGTTCAAC
GACACGATCG CCGCGAACGT CGCGTACGGC CAGACGCCCG ATCGCGCACG CGTGCAGGCG
GCACTCGAGG CGGCGAACCT GGCCGACGCG GTCGCCGCAA TGCCCGACGG GCTTGACACG
CTGGTCGGCG GCAACGGGAT GCGGCTGTCG GGCGGCCAGC GGCAGCGGCT CGCGATCGCG
CGCGCGATCT ACAAGGACGC ACCGATCCTG ATCCTCGACG AGGCGACCTC CGCGCTCGAT
TCGGAATCCG AACGCCACGT GCAGGCCGCG CTCGAGCGGC TGATGGAAGG GCGCACGACG
CTCGTGATCG CGCATCGGCT GTCGACGATC GAGCGTGCGG ACCGGATCCT CGTGCTCGAA
GCCGGCAAGA TCGTTGAAGA GGGCAGCCAC GAAGAACTGT TGCGCCACGG CGGGCTGTAC
GCGCACCTCC ACCGGATCCA GTACCAGCAG CAGGCGGCGT GA
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| Protein sequence | METQNTLRKP MDGTGTSPFT VLKRLWPYIR PLIGIVVLAV VTMGVVAATE AGIPALLKPL
LDHGFGSHGS DRAKWYVPMA VIGLALVRGV SQYASNYLLN YVSNRILLQL RLEMFQRMLH
TGASFFQRET ASTVINAIVF EVNQILAVLT GVMVTLVRDS LTVMFLLGYL FYLNWRLTLI
VAVILPGIGW LVSKINRRLR RLNREHQTLT NELSYIVEET VGGYKVVKVH NGETYEMDRF
TAMSKRLRGY AMRMTISGGL AQPLTQFLAS IALAVVITIA VVQSTNDQTT VGGFVAFVTS
MLLVISPLKH LIDVNQPLQR GMTAAELIFG LIDEPGEPQG GGRALPHARG EIEFRGVSFD
YGASERPTLD RISFKVAPGE MIALAGPSGS GKTTLVNLLP RFFDPTGGAI LVDGVPVADY
DLHALRGQMA MVSQDVVLFN DTIAANVAYG QTPDRARVQA ALEAANLADA VAAMPDGLDT
LVGGNGMRLS GGQRQRLAIA RAIYKDAPIL ILDEATSALD SESERHVQAA LERLMEGRTT
LVIAHRLSTI ERADRILVLE AGKIVEEGSH EELLRHGGLY AHLHRIQYQQ QAA
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