| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_2208 |
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| Symbol | |
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| ID | 6177818 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | - |
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| Start bp | 2461815 |
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| End bp | 2462594 |
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| Gene Length | 780 bp |
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| Protein Length | 259 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 641681981 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001808903 |
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| Protein GI | 172061251 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 0.336154 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.942948 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGATCTCG GTATCGCAGG AAAGACCGCC CTCGTGTGCG CGGCGAGCAA GGGCCTCGGG
CGCGGCTGCG CGGAAGCGCT GGCCGCCGAG GGCGTGAATC TCGTGATCGT CGCGCGCACG
CGCGACACGC TGGAGGAAAC CGCCGAGGAG ATCCGCGCCG CGTCGAACGT GTCGGTCACC
GCCGTCGCGT GCGACATCAC GACGCCCGAC GGGCGCGCGG CTGCGCTCGC CGCCTGCCCG
CAGCCGGACA TTCTCGTGAA CAATGCGGGC GGCCCGCCGC CTGGCGACTT CCGCGATTTC
TCGCACGACG ACTGGATCCG CGCGCTCGAG GCGAACATGC TGACGCCGAT CGAGCTGATC
CGCGCGACCG TCGACGGGAT GATCGGGCGC GGCTTCGGCC GGATCGTCAA TATCACGAGT
TCGGCGGTGA AGGCGCCGAT CGACGTGCTC GCGCTGTCGA ACGGCGCGCG CTCGGGGCTG
ACCGGCTTCG TCGCGGGGCT GTCGCGCAAG GTCGCCGGCC AGGGCGTGAC CATCAACAAC
CTGCTGCCGG GGCTGTTCGA CACCGACCGG ATCGCGACGA CGCTCGCCGC GTCGGCGAAG
GCGCAGGGCG TGACGGTCGA CGAACTGCGC GCGCGGCGCG CGAAGGAGAT CCCGGCCGGG
CGCCTCGGCA CGCGCGCCGA ATTCGGCGCC GCGTGCGCGT TCCTCTGCAG CGTGCATGCC
GGCTATATCA CCGGGCAGAA CTGGCTGCTC GACGGCGGCG CGTATCCGGG CACGTTCTGA
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| Protein sequence | MDLGIAGKTA LVCAASKGLG RGCAEALAAE GVNLVIVART RDTLEETAEE IRAASNVSVT
AVACDITTPD GRAAALAACP QPDILVNNAG GPPPGDFRDF SHDDWIRALE ANMLTPIELI
RATVDGMIGR GFGRIVNITS SAVKAPIDVL ALSNGARSGL TGFVAGLSRK VAGQGVTINN
LLPGLFDTDR IATTLAASAK AQGVTVDELR ARRAKEIPAG RLGTRAEFGA ACAFLCSVHA
GYITGQNWLL DGGAYPGTF
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