Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1940 |
Symbol | alr |
ID | 6178248 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 2162853 |
End bp | 2163923 |
Gene Length | 1071 bp |
Protein Length | 356 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641681699 |
Product | alanine racemase |
Protein accession | YP_001808638 |
Protein GI | 172060986 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0787] Alanine racemase |
TIGRFAM ID | [TIGR00492] alanine racemase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 0.466995 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 0.712057 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCGCGCC CGATCTCCGC CACCATCCAT ACCGCCGCTC TCGCGAACAA TCTCTCCGTC GTCCGCCGCT TTGCCGGCCC GTCCAAGGTC TGGACGGTCG TCAAGGCCAA CGCGTACGGC CACGGTCTCG CGCGCGTGTT TCCCGGCCTG CGCGGCACCG ACGGCTTCGG CCTGCTCGAC CTCGACGAGG CCGTGAAGCT GCGCGAGCTG GGGTGGGCCG GTCCGATCCT GCTGCTCGAG GGGTTCTTCC GCTCGACCGA CATCGACGTG ATCGACCGCT ACAGCCTGAC GACCACCGTC CACAACGACG AGCAGATGCG GATGCTGGAG ACGGCGCGGC TGTCGAAGCC CGTCAACGTG CAGCTCAAGA TGAACAGCGG CATGAACCGG CTCGGCTACG CGCCGGAGAA ATACCGCGCC GCGTGGGAGC GCGCCCGTGC GTGCCCCGGC ATCGGCCAGA TCACGTTGAT GACCCATTTT TCGGATGCCG ACAACGAGCG CGGCGTCGCC GAGCAGCTCG CGACGTTCGA GCGCGGCGCG GAAAACATCG CCGGCGCGCG CAGCCTCGCG AATTCGGCGG CCGTGCTGTG GCATCCGGAT ACGCACTTCG ACTGGGTGCG CCCGGGGATC ATGCTCTACG GCGCGTCGCC GTCGGGACTG TCGGCCGACA TCGCCGACAC CGGGTTGAAG CCCGCGATGA CGCTCGCGTC CGAGCTGATC GCGGTGCAGA CCATCGCGAA GGGGCAGGCG ATCGGCTATG GCTCGACGTT CTCCGCGCCG GCCCAGATGC GCATCGGCGT CGTCGCGTGC GGCTACGCGG ACGGCTATCC GCGCGTCGCG CCCGAAGGCA CGCCTGTGAT CGTCGACGGC ATCCGCACGC GGATCGTCGG CCGCGTGTCG ATGGACATGA TCACGGTCGA CCTCACACCG TGCCCGCAGG CCGGGGTCGG CGCGCGGGTC GAGCTGTGGG GCAACGCGCT GCCGATCGAC GACGTCGCGC GCCATTGCGG GACCATCGGC TATGAACTGA TGTGCGCGGT CGCCGGCCGC GTGCCGGTGC GCGCGGAATA A
|
Protein sequence | MPRPISATIH TAALANNLSV VRRFAGPSKV WTVVKANAYG HGLARVFPGL RGTDGFGLLD LDEAVKLREL GWAGPILLLE GFFRSTDIDV IDRYSLTTTV HNDEQMRMLE TARLSKPVNV QLKMNSGMNR LGYAPEKYRA AWERARACPG IGQITLMTHF SDADNERGVA EQLATFERGA ENIAGARSLA NSAAVLWHPD THFDWVRPGI MLYGASPSGL SADIADTGLK PAMTLASELI AVQTIAKGQA IGYGSTFSAP AQMRIGVVAC GYADGYPRVA PEGTPVIVDG IRTRIVGRVS MDMITVDLTP CPQAGVGARV ELWGNALPID DVARHCGTIG YELMCAVAGR VPVRAE
|
| |