Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1862 |
Symbol | |
ID | 6177996 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | - |
Start bp | 2077416 |
End bp | 2079935 |
Gene Length | 2520 bp |
Protein Length | 839 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641681621 |
Product | 1A family penicillin-binding protein |
Protein accession | YP_001808560 |
Protein GI | 172060908 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.000000145704 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0000925337 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGCCAATTA TCAAACGACC GCCTTCTTCT TCCGACCGGA ACGAACCTCA CTACACATTG CGCCGTTCGC CGTCGGGAGC CTACTACCCC GATGACGACA ACGGCGACGA CGATCGCCGC ACGCAGCGCC GTGGAGGAGG AGGCGGCGGC GGCCGCTCGT TCGGCTCGCG CGTCGCGCTG TGGTTCGTCG GACTGTTCGC GACGCTCGCG GTCGTCGGCG CGCTGATCGT CGGCTACGCA CTCGTCGTGA TGGCACCGCA ACTGCCGTCG CTCGATGCGT TGACCAACTA CCAGCCGAAG GTGCCGTTGC GCGTATTCAC CGCCGATCAC GTGCTGATCG GCGAGTTCGG CGAGGAGCGC CGCAGCCTCG TGCGCTTCCA GGACATTCCC GACGTGATGA AGAAGGCCGT GCTCGCGATC GAGGACTACC GCTTCTACGA ACACGGCGGC GTCGACTTCC TCGGCATCCT GCGCGCGGGC GTGGCCGACC TGATGCACGG CGGCGCGCGC CAGGGCGCGA GCACGATCAC GATGCAGGTC GCGCGCAACT TCTTCCTGTC GAGTGAAAAG ACCTACACGC GCAAGATCTA CGAGATGCTG CTCGCGTACA AGATCGAGAA GGCGCTGACG AAGGACCAGA TCCTCGAGCT GTACATGAAC CAGATCTACC TGGGCCAGCG CTCGTACGGC TTCGCGGCCG CCGCGCGCGT GTATTTCGGC AAGGACCTGA AGGACATCAC GCTCGCCGAA GCGGCGATGC TCGCGGGGCT GCCGAAGGCG CCGTCCGCGT ACAACCCGGT CGTCAATCCG AAGCGCGCGA AGGTGCGTCA GGAATACATC CTGAAGCGCA TGCTCGAGAT CGGCTACATC ACGCAGCCGC AGTACGACCA GGCGGTGAAG GAGGAGATCC GCGTGCGCAC GCCGGGCAAC CAGTATGCGG TGCATGGCGA ATACGTGTCC GAGATGGTGC GGCAGATGAT GTACCAGCAG TACAAGGACG AAACCTATAC GCGCGGACTG ACCGTCACGA CGACGATCAA CTCGGCCGAC CAGGAAGCGG CGTACCAGGC CGTGCGCCGC GGCATTCTCG ATTACGAGCG CCGCCACGGC TATCGCGGGC CGGAAGGCTC GATCAACCTG CCGGCGGCCG GCGACGAGCG CGACGAGGCG ATCGACGACG CGCTCGCCGA TCATCCGGAC AACGGAGATC TGCAATCGGC GGTGGTGCTG GCGGCGTCGC CGAATGCGGT CGAGGTGCAG TTCGTCGGCG GCGCGACGAC GACGATCGGC CCGGCCGGGC TGCGCTTCGT GTCGGGCGCG CTGAATCAGC GCGCGAATGC CACGCTGCGG ATCAAGCCGG GTTCGATCGT GCGCGTGCTG AAAGATGGCA AGACGGGCTG GCAGGTCGTG CAGCTGCCGC AGGTCGAAGG CGCGCTCGTC GCGATCGCGC CGCAGGACGG GGCGATCCGC TCGCTCGTCG GCGGCTTCGA CTTCAACAAG AGCAAGTTCA ACCACGTGAC GCAGGCGTGG CGCCAGCCGG GTTCGTCGTT CAAGCCGTTC ATTTATTCGG CTTCGCTCGA CAAGGGCCTC GGACCGGCGA CGATCATCAA CGATGCACCG CTGTACTTCC CGCCGAGCGT GCCGGGCGGC ACCGCGTGGG AGCCGAAGGA CGACGACCAG CCGGACGGCC CGATGTCGAT GCGTACCGGC CTGCAGCGTT CGAAGAACCT CGTGTCGATC CGGATCCTCG CGTCGATCGG CACGCAGTAC GCGCAGCAGT ACGTGACGCA GCGCTTCGGC TTCGATCCTG CGAAGACGCC GCCGTATCTG CCGATGGCGC TCGGTGCGGG TCTCGTGACG CCGCTGCAGC TCGCGACCGG CTATGCGGTG TTCGCGAACG GCGGCTACAA GGTCGATCCG TACCTGATCG CCGAAGTCGA CGACGCGCAC GGGCAGGCGC TGCAGCGGTC GCAGCCGGTC GTGGCCGGCG GCACGGCGCC GCGCACGATC GAAGGTCGCA ACGCGTACGT GATGAACAGC CTGCTGCATA CGGTCGCGAC GGCCGGCACG GGCGCCGGCA CCAACGCGCT TGGTCGCGGC GACCTGCAGG GCAAGACGGG TACGACGAAC GATGCGAAGG ACGGCTGGTT CGCCGGCTAC CAGCAGTCGC TCGTCGCGGT CGCGTGGATG GGCTTCGACC AGCCGAAGAG CCTCGGCAGC CGCGAATTCG GCGCGCAGCT CGCGCTGCCG ATCTGGGTGA ACTACATGCG CACCGCGCTG AACGGCGTGC CCGAGCAGCA GATGCCGATG CCGGACGGCC TGACGACGGT CGACGGCGAG CTGTACTACG CCGATCGCAC GCCGGGCAAC GGCTTCGTCG GGAGCGTGGA CATCAATCCG GCCGAGAACG CGATCAGCGC GAACGACGCA CTTGGCTCGG CCGGCGCGGC CGGGCTTGCG CCGCCGCCCG TCACGCAGCA GGAGAAGCAG CAGATCATGG ACATGTTCGA GAACAAGTAA
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Protein sequence | MPIIKRPPSS SDRNEPHYTL RRSPSGAYYP DDDNGDDDRR TQRRGGGGGG GRSFGSRVAL WFVGLFATLA VVGALIVGYA LVVMAPQLPS LDALTNYQPK VPLRVFTADH VLIGEFGEER RSLVRFQDIP DVMKKAVLAI EDYRFYEHGG VDFLGILRAG VADLMHGGAR QGASTITMQV ARNFFLSSEK TYTRKIYEML LAYKIEKALT KDQILELYMN QIYLGQRSYG FAAAARVYFG KDLKDITLAE AAMLAGLPKA PSAYNPVVNP KRAKVRQEYI LKRMLEIGYI TQPQYDQAVK EEIRVRTPGN QYAVHGEYVS EMVRQMMYQQ YKDETYTRGL TVTTTINSAD QEAAYQAVRR GILDYERRHG YRGPEGSINL PAAGDERDEA IDDALADHPD NGDLQSAVVL AASPNAVEVQ FVGGATTTIG PAGLRFVSGA LNQRANATLR IKPGSIVRVL KDGKTGWQVV QLPQVEGALV AIAPQDGAIR SLVGGFDFNK SKFNHVTQAW RQPGSSFKPF IYSASLDKGL GPATIINDAP LYFPPSVPGG TAWEPKDDDQ PDGPMSMRTG LQRSKNLVSI RILASIGTQY AQQYVTQRFG FDPAKTPPYL PMALGAGLVT PLQLATGYAV FANGGYKVDP YLIAEVDDAH GQALQRSQPV VAGGTAPRTI EGRNAYVMNS LLHTVATAGT GAGTNALGRG DLQGKTGTTN DAKDGWFAGY QQSLVAVAWM GFDQPKSLGS REFGAQLALP IWVNYMRTAL NGVPEQQMPM PDGLTTVDGE LYYADRTPGN GFVGSVDINP AENAISANDA LGSAGAAGLA PPPVTQQEKQ QIMDMFENK
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