Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1667 |
Symbol | |
ID | 6176386 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 1866550 |
End bp | 1868229 |
Gene Length | 1680 bp |
Protein Length | 559 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 641681428 |
Product | hypothetical protein |
Protein accession | YP_001808370 |
Protein GI | 172060718 |
COG category | [R] General function prediction only [S] Function unknown |
COG ID | [COG0446] Uncharacterized NAD(FAD)-dependent dehydrogenases [COG3453] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01244] conserved hypothetical protein TIGR01244 |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.358711 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCATCC GCCCGCTGAC CGACCTCGTG TCGGTCTCGC CCCAGATCGC CGCGACCGAC CTGCCCGCGC TGCACGCGGC GGGCATCCGC GCGATCGTCT GCAACCGTCC GGACGGCGAA GGCGCCGACC AGCCGACCGT CGCCGAGATC CGCGCCGCCG CCGCGCCGCT CGGCATCGCC GTGCATTACC TGCCCGTCGA TACCGGCAAG GTCACCGACG AGCAGGCCGC GCAGTTCGGC GCGCTCGTCG CGCCGCTCGC AGGCCCCGTC CTCGCGTACT GCCGCAGCGG CACGCGTTCG GCGACGCTGT GGGCGCTGTC GCAGGCTGGC CGGCGGCCGG CCGCAGACAT CGTCGCGCTC GCCGCCGCGG CCGGCTACGA CCTCGGCGCG CTCGCACCGC GTCTTGCGCA AGGCGTCGCG CCCGGCGGCG ATCAGGCCGC ACCGGCCGTC GATGCGCGGC ACGACATCGT GATCGTCGGC GCGGGCGCGG CCGGCGTCGC GGTCGCGTCG AGCCTGCTCG CGCGCGACGC GTCGCTCGAT ATCGCGGTGA TCGACCCGGC CGATACCCAC TATTACCAGC CGGGCTGGAC GATGGTCGGC GCGGGTGTGT TCCGGCCCGA CACGACCGCG CGCCGGATGG CCGACCTGCT GCCGCGCGGC GTGAAATGGA TCCAGGCGGC GGTCGCCGGC TTCGAACCCG ACGCGCACGC GGTCGTGCTC GACGGCTGCC GGCGCATCGG CTACCGCAGG CTGGTCGTGT GCCCGGGGCT CAAGCTCGAC TGGCACGCGA TCGATGGCCT CGCGCAGACA CTCGGCCGCA ACGGCGTCAC GTCGAACTAT CGCTACGATC TCGCGCCGTA CACGTGGGAA CTGGTGCAGG CGTTCCGCGG CGGCAACGCG CTGTTCACCC AGCCGCCGAT GCCGATCAAG TGCGCGGGCG CGCCGCAAAA GGCGATGTAC CTGTCGTGCG ATCAATGGCG GCGCACGGGG CGCCTCGGCG CCGCGAACGT CGAGTTCCTG AATGCGGGCG GCGCGCTGTT CGGCGTCGCC GACTACGTGC CCGCGCTGAT GGAGTACGTG AAACGCTATG ACATCGCGCT GTCGTTCGGC CACAACCTCG TCGCGATCGA CGGGCCGGCG CGGCGCGCGA CGTTCACGCG CGCGCTGCCC GACGGCGGCA CGGAAACCGT CGAGCGGGCG TTCGACATGA TCCACGTCGT GCCGCCGCAG AAGGCGCCCG ATTTCGTGCG CGCGAGCCCG CTCGCCGACG CGGCCGGCTG GATCGACGTC GATCCGGCGA CGCTGCGGCA CCAGCGGTTC GCGGACATCT TCGCGCTCGG CGACGTCACC AACACGACCA ACGCGAAAAC CGCCGCGGCC GCACGCAAGC AGGCGCCCGT CGTCGCGCAC AACCTGCTTG CGTCGCTCGG CCGCGCGCAC GGCAACGCCG CGTACGACGG CTACGGATCG TGTCCGCTCA CCGTCGAGCG CGGCAAGATC GTGCTCGCCG AGTTCCTGTA CGGCGGCAAG GTCGCGCCGA CCTTCCCCGC GTGGCTGATC GACGGCAAGC GTCCGTCGCG GCTCGCGTGG CTGCTCAAGG AGCGCGTGCT GCCGCCGCTC TACTGGAAGG CGATGCTCAA GGGCCGCGAA TGGCTCGCCA AGCCCGCGAT CGCCCGTTGA
|
Protein sequence | MTIRPLTDLV SVSPQIAATD LPALHAAGIR AIVCNRPDGE GADQPTVAEI RAAAAPLGIA VHYLPVDTGK VTDEQAAQFG ALVAPLAGPV LAYCRSGTRS ATLWALSQAG RRPAADIVAL AAAAGYDLGA LAPRLAQGVA PGGDQAAPAV DARHDIVIVG AGAAGVAVAS SLLARDASLD IAVIDPADTH YYQPGWTMVG AGVFRPDTTA RRMADLLPRG VKWIQAAVAG FEPDAHAVVL DGCRRIGYRR LVVCPGLKLD WHAIDGLAQT LGRNGVTSNY RYDLAPYTWE LVQAFRGGNA LFTQPPMPIK CAGAPQKAMY LSCDQWRRTG RLGAANVEFL NAGGALFGVA DYVPALMEYV KRYDIALSFG HNLVAIDGPA RRATFTRALP DGGTETVERA FDMIHVVPPQ KAPDFVRASP LADAAGWIDV DPATLRHQRF ADIFALGDVT NTTNAKTAAA ARKQAPVVAH NLLASLGRAH GNAAYDGYGS CPLTVERGKI VLAEFLYGGK VAPTFPAWLI DGKRPSRLAW LLKERVLPPL YWKAMLKGRE WLAKPAIAR
|
| |