Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_1617 |
Symbol | |
ID | 6176633 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 1816735 |
End bp | 1819317 |
Gene Length | 2583 bp |
Protein Length | 860 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 641681378 |
Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase |
Protein accession | YP_001808320 |
Protein GI | 172060668 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 23 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAACCACG AACATGCCGA TTTGCCGGCG ATTCTGATCA TCGATGACGA CGCGATGACG CGGCTGCTGG TCGTGGAAAC GCTGGAGCCC GATGGTTTTC GCGTCGAGGA GGCGACGGGG CCGCAGGAAG GCATCGAAGC GTTCCTGCGT CATCGTCCCG CCGTCGTGCT GCTCGATGTC GAGATGCCCG GCGGCGACGG CTTCGACTGC TGCCGCGCGC TGCGCGCGTT GCCGGAAGGC CGCCGCGTGC CGATCGTGAT GCTCACCGGC AACGACGACG ACGCATCGAT CGCCAGCGCG TTCGACGCCG GCGCGACCGA TTTCGTATCG AAGCCGATGC GATGGAAGCT GCTTGGCTAC CGGATCCGGT ATCTGCTGCG CGCCGCCGCG GCGGTCGAAA AGCTGGCGAC CACCGAGGTC AGCCTCATGC ACGCGCAAGC GCTCGCGCAT GTCGGCAACT GGGAATTCCA GGCGGGCCGC ACGGAGGGCT ACTGGTCGCC GGAGCTGTAC CGGATCCTCG GGCTCGACGC GGCGCACGCG CCGCCGACGT TCGAGCGGCT GCTGCAGGCC GTGCCGGCCG ACGAACAGCC GTTGCTCGTG CAGTCGTTCA CGAGCCTGCG CACCGAGGGC GTGCCGTTCT CGCTCGAGCA TCGGCTCGTT CACGCGGACG GCACCGAGCG CTGCGTGCTG CATCAGGCGG AGTCGGGGCG CGATCCGGAT CACGCGATCA TCCTGCGCGG CATCGTGCAG GACATCACCG AGCGCAAGAT GCAGCAGGGC CGCATCGAAT ACCTTGCCAA CCACGATGCG CTCACCGGCC TGCCCAATCG CAACCTGCTG AGCGACCGGA TGGAGCAGGC GATGTCGCAG GCGCGCCGCA CCGGGCAGCT GGTCGCGGTG ATGGTGCTCG ACCTCGACCG CTTCAAGCAC ATCAACGACA GCTTCGGCCA CTCGGTCGGC GACGGGCTGC TGCGCGTCGT CGCCGCTCGG CTGAAGCGCT CCGTGCGCGA CGGCGACACG GTCGCGCGGC TCGGCGGCGA CGAATTCGTC GTGATGCTGG TCAACCTGGC GACGCAAGCG GACGCGGACG TGATCGCCCG CAAGATCCTC GACACCTTCA TCGAGCCGTT CACGCTCGAC GAACACGACC TGCACGTGAC GACCAGCGTC GGCGTGAGCC TCTGCCCGAC CGACGGCGCC AACGCCGAAA CGCTGCTGAA AACGGCCGAC GCGGCGCTGT ATGCGGCGAA GGAACACGGG CGCAACTGCT ACCGCTTCTA CACGCGCGAG CTCGGTGCGC GCGTCGAGGA GCAGACGATC CTCGAGAACG CGCTGCATCA GGCCGTCGCG AACCACGAGC TCGAGCTGTA CTACCAGCCG AAGGTCGATC TCAAGACCGG CCAGATCAGC GGCGTCGAGG CGCTGATACG CTGGCGGCGG CCGGGCATCG GCGTGATTCC GCCCGACCGC TTCATCCCGA TCGCCGAAGA CTGCGGGCTG ATCTTGCCGA TCGGCGAGTG GGTGTTGCGC ACGGCGTGCC TGCAGGCCGT CGCATGGCGC CGGGAAGGCC ATCCGCCGAT CCGGATCGCC GTCAACCTGT CGGCGCGCCA GTTCCGGCAG CAGGACGTGG CCGCCATGGT GCGCACGACG CTCGAGGAGA CCGGCCTGGC GCCGGACTCG CTCGAACTCG AACTCACCGA AAGCGTGCTG ATGCAGGACT GCGACGCGAT CGCGCACACG CTGCGCGAAC TGAAGGCGCT CGGCGTCGTG CTGTCCCTCG ACGATTTCGG CACCGGCTAT TCGAGCCTGT CGTACCTGAA GGACTTGCCG ATCGACGTCG TGAAGATCGA CCGGTCGTTC CTCGACGACG TCACCACCAG CGCCGAAGGC GCTTCGCTGA CGCGCTCGAT CATCGCGATG GCCGAGTCGC TGCACATGGA GACGGTGGCC GAGGGCGTGG AGACCGAAGC GCAGCTGTCG TTCCTGAACC GGCATCGCTG CCATGCGATG CAGGGCTACT ACTTCAGCCA TCCGGTCACC GGTGATGAAA TCGCCGACAT GCTGTCCGCC GGCTCGCAGC TTCCCGAGCA CTGCCGGCAG CGCGAATTGC TGCACCGGAC GCTGCTGCTG GTGGACGACG ACCGCGAGGT CCTGCGCAGG CTCAGGCGCG CGCTCGGCCG CGACGGCTAC GAGATTCTCG ACACGACGGA TCCCGACGAA GCGCTCGTCC TGCTCGCGCA GCATCGCGTC GGCGTGATCG TGTCGGATTT CCGCATGCCG AGCCTGTCCG GCATCGACCT GCTGCAGCGT GTGAAGGCGC TGTACCCGGA CATCGTGCGC ATCCTGCTGT CGGGCTACGG GGAAGGGGAC GCGCTCGCCG ACGCGGCCGG CAACGGCTCC GTCCAGAAAT TGCTGATCAA GCCGTGGGAT GTCGCGCTGC TGCGCAAGCA TATTGCGGAG TCGTTCCAGC GGTTCGAGCA CAGCTCGCTG CAGAGCCGGG TGGGCCTCGG CGCGGGCCAT CTCGGCATTC ATCCGTCTCC GCTGAGGGCC GTCGACGTGG CGCAAGCGCC TGGGCGAACC TGA
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Protein sequence | MNHEHADLPA ILIIDDDAMT RLLVVETLEP DGFRVEEATG PQEGIEAFLR HRPAVVLLDV EMPGGDGFDC CRALRALPEG RRVPIVMLTG NDDDASIASA FDAGATDFVS KPMRWKLLGY RIRYLLRAAA AVEKLATTEV SLMHAQALAH VGNWEFQAGR TEGYWSPELY RILGLDAAHA PPTFERLLQA VPADEQPLLV QSFTSLRTEG VPFSLEHRLV HADGTERCVL HQAESGRDPD HAIILRGIVQ DITERKMQQG RIEYLANHDA LTGLPNRNLL SDRMEQAMSQ ARRTGQLVAV MVLDLDRFKH INDSFGHSVG DGLLRVVAAR LKRSVRDGDT VARLGGDEFV VMLVNLATQA DADVIARKIL DTFIEPFTLD EHDLHVTTSV GVSLCPTDGA NAETLLKTAD AALYAAKEHG RNCYRFYTRE LGARVEEQTI LENALHQAVA NHELELYYQP KVDLKTGQIS GVEALIRWRR PGIGVIPPDR FIPIAEDCGL ILPIGEWVLR TACLQAVAWR REGHPPIRIA VNLSARQFRQ QDVAAMVRTT LEETGLAPDS LELELTESVL MQDCDAIAHT LRELKALGVV LSLDDFGTGY SSLSYLKDLP IDVVKIDRSF LDDVTTSAEG ASLTRSIIAM AESLHMETVA EGVETEAQLS FLNRHRCHAM QGYYFSHPVT GDEIADMLSA GSQLPEHCRQ RELLHRTLLL VDDDREVLRR LRRALGRDGY EILDTTDPDE ALVLLAQHRV GVIVSDFRMP SLSGIDLLQR VKALYPDIVR ILLSGYGEGD ALADAAGNGS VQKLLIKPWD VALLRKHIAE SFQRFEHSSL QSRVGLGAGH LGIHPSPLRA VDVAQAPGRT
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