| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1512 |
|---|
| Symbol | |
|---|
| ID | 6176595 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1674367 |
|---|
| End bp | 1675281 |
|---|
| Gene Length | 915 bp |
|---|
| Protein Length | 304 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641681273 |
|---|
| Product | nodulation ABC transporter NodI |
|---|
| Protein accession | YP_001808215 |
|---|
| Protein GI | 172060563 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01288] ATP-binding ABC transporter family nodulation protein NodI |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0976577 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 35 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTTG CACCGATCGA TTTCCGGAAC GTTGAAAAGC GCTATGGCGA CAAGCTCGTC
GTCAACGACC TCTCCTTCCA CGTGCAGGCC GGCGAATGCT ACGGCCTGCT CGGGCCGAAC
GGCGCCGGCA AGACCACGAC GCTGAAGATG CTGCTCGGCC TCGTCTATCC CGATGCCGGC
GCCATTTCAC TGTGCGGCGA ACCCGTTCCG ACGCGCGCGC GGCATGCACG CCGACGCGTC
GGTGTCGTCC CGCAGTTCGA CAACCTCGAT CCGGACTTCA CGGTCCGCGA AAACCTGCTC
GTGTTCAGCC GCTATTTCGG GATGTCGGCG CAGGCTGCGC GCGCGCTCGT GCAGCCGCTG
CTCGAATTCG CGAAGCTGGA AAACAAGGCC GATGCCAAGG TGGGCGAGCT GTCGGGTGGG
ATGAAGCGGC GTCTGACACT CGCCCGCGCG CTCGTCAACG ATCCGGACGT GCTGGTGCTC
GACGAGCCGA CCACAGGCCT CGATCCGCAG GCGCGCCACC TGATGTGGGA GCGGTTGCGC
TCGCTGCTCG CTCGCGGCAA GACGATCCTG ATCACCACGC ATTTCATGGA GGAAGCCGAA
CGCCTGTGCG ACCGGCTGTG CGTGATCGAG GAAGGCCGCA AGATCGCCGA AGGTGCGCCG
CATGCGCTGA TCGAGTCCGA GATCGGCTGC GACGTGATCG AGATCTACGG GCCCGAGCCG
GTCGCGTTGC GCGACGAGCT GGCGCCGTTC GCGAAGCACA CCGAGATCAG CGGCGAAACG
CTGTTCTGCT ACGTGACCGA TCCCGAGCCG CTCAGTGCGC GACTCAAGGG ACGCACGGGG
TTGCGCTATC TGCATCGCCC GGCCAATCTG GAAGACGTGT TCCTGCGGCT CACGGGCCGC
GAAATGCAGG ACTGA
|
|---|
| Protein sequence | MSVAPIDFRN VEKRYGDKLV VNDLSFHVQA GECYGLLGPN GAGKTTTLKM LLGLVYPDAG
AISLCGEPVP TRARHARRRV GVVPQFDNLD PDFTVRENLL VFSRYFGMSA QAARALVQPL
LEFAKLENKA DAKVGELSGG MKRRLTLARA LVNDPDVLVL DEPTTGLDPQ ARHLMWERLR
SLLARGKTIL ITTHFMEEAE RLCDRLCVIE EGRKIAEGAP HALIESEIGC DVIEIYGPEP
VALRDELAPF AKHTEISGET LFCYVTDPEP LSARLKGRTG LRYLHRPANL EDVFLRLTGR
EMQD
|
|---|
| |