| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1468 |
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| Symbol | |
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| ID | 6176442 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1635301 |
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| End bp | 1637754 |
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| Gene Length | 2454 bp |
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| Protein Length | 817 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641681227 |
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| Product | ribonuclease R |
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| Protein accession | YP_001808171 |
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| Protein GI | 172060519 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.136516 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAGCAAAT ATCCGTACCC CATTCCGAGC CGTGAAGAAA TTCTCGGCGT GCTGCGTACG
AGCGACGCGC CGCTGGCCGC CAACGACATC GCCGAAGCGC TGTCGATCAA GCGCCAGGAA
CGCGAGGGGT TCTTCCGGCG TGTCGCCGCA ATGGAACGCG ACGGCCAGAT CCGCCTCGAC
AAGCGCGGCC ACTACCAGCT CACTCATCCG TCGAACTTCG TTGCCGGTCG CGTGCAAGGA
CACCGCGACG GCTACGGCTT CGTGATCCGC GACGACGGCC AGGACGACCT GTTCTTGCCG
AACGGCGAGA TGCAGAAGGT GATGCACAAC GACCGCGTGC TCGCGCGGAT CGTCGGCTAC
GATCGCCGCG GCCGGCCGGA AGGCCATGTC GTCGAGGTCA CCGAGCGCGC GAACAAGCGC
GTGATCGGCC GCCTGCTCAA CGAGAACGGC GCGCTGATCG TCGCCCCCGA AGACAAGCGC
ATCGGCCACG ACATCCTGAT CACGCAGAAC GTGAAGAAGG CGAAGGTCGG GCAGGTCGTC
GTCGTCGAAC TGACCGATTT CCCGAGCCGC CATTCGCAAC CGCTCGGCCG CGTCGTAGAA
GTGCTCGGCG ATATCGACGA TCCAGGCATG GAAATCGAGA TCGCCGTGCG CAAATACGGC
GTGCCGCACG AATTCGGCCA GCGGGCGCTC GACGATGCCG CCGCGCTGCC GGACGCGGTA
CGTCCGGCCG ACCTGCGCTT CCGCGTCGAT TTGCGCGACG TGCCGCTCGT GACGATCGAC
GGCGAGGACG CCCGCGACTT CGACGATGCC GTCTACTGCG AGCCGACCAA GGTCGGGCGC
GGCGACGGCT ACCGCCTGAT CGTCGCGATC GCGGACGTGT CGCACTACGT GCAGCCGGGC
AGCGGCCTCG ACGCCGACGC GCTGGAGCGC AGCACGTCGG TCTATTTCCC GCGGCGCGTG
ATCCCGATGC TGCCGGAGAA GCTGTCGAAC GGGCTGTGCT CGCTGAATCC GCAGGTCGAC
CGCTGCGTGC TCGTGTGCGA CATGGTGATT ACCGCGCGCG GCGAGATCAA GGCGTACCAG
TTCTATCCGG CGGTCATCCA TTCGGCCGCG CGCCTGACGT ACACCGAAGT CGCGGCCGTG
CTGTCGAACA CGAAGGGGCC GGAGGCCGCG CGCCGCGCGG ACCTGCTGCC GCACCTGCAG
GATCTGTACG GCGTCTACAA GTCGCTGTTC GCCGCACGCC AGAAGCGCGG CGCGATCGAC
TTCGACACGA CCGAGACGTA CATCGTCTGC AACTCGCAGG GCAAGATCGA ACAGATCGTG
CCGCGTCAGC GCAACGATGC GCACAAGCTG ATCGAGGAAT GCATGCTGGC CGCGAACGTC
TGCGCGGCCG ACTTCCTTAA GCGCAACAAG CATGCGGGCC TGTACCGCGT GCACGCGGGG
CCGACGCCGG AAAAGCTCGA GAACCTGCGC GCGTTCCTGC GCGGCATGGG CCTGTCGCTC
GGCGGCGGTG AGAAGCCGCA TGCGAGCGAC TATGCGGCGC TGATGGCGCA GATTCGCGAC
CGGCCCGACG CGCAGATGCT GCAGCCGATG CTGCTGCGCT CGATGCAGCA GGCCGTCTAC
AGCCCGGACA ACATCGGCCA CTTCGGTCTC GCGTATGAGG CGTACGCGCA CTTCACGAGC
CCGATCCGCC GCTATCCCGA CCTGCTCACG CACCGCGCGA TCTACGCGAT CCTGTCGGGC
AAGAAGTACA CGCCGAAGGC ACCGGACGGC TTCGAGCTGA ACACCGCGCT GTCGCCACGC
GCCCGCGCGA TGCAGCAGGC CGACGACGAA GCGCGCGGCC GTTCGCGCGT GAACACCGCG
ATCTGGGAAG AGCTCGGCCT GCATTGCTCG GCGAACGAGC GGCGTGCCGA CGAAGCGTCG
CGCGACGTCG AGGCCTGGCT CAAGTGCTAC TTCATGCGCG ACAAGCTCGG CGAGGAATAC
GGCGGGATGG TGAACGGCGT CACGTCGTTC GGCATCTTCG TGCAGCTCGA CACGCTGTTC
ATCGAAGGGC TCGTGCACGT CACGGAACTC GGCTCGGACT ACTTCCAGTA CGACGAGATC
AAGAACGAGC TGCGCGGCGA GCGCACGGGC ATCCGTTATC GCCTGTCGGA TCGCGTGCGC
GTGCAGGTGA GCCGCGTCGA TCTCGATGCG CGCAAGATCG ACTTCCGCCT CGTGCGCGAT
ACGCCGGTGA AGGCGCCGCG TCCCGCACCG GCGCCGGTTG CTGTCGGCAA CGGCAACGAT
CGCGGCGGCC CGCGCGTGCG CTCGTTGCCG CCGGTGGAGG AAGCCGCGCC GCGTCGCAAG
CGGACGGCCA GCGCACCGAC CGCCGCGGTG CACGACACGC GTGCGGCGAA GAAGAAGGGC
GGCGCGCCGG CGAAGACGGC CGCGAAGAAG ACACACGCCC GCAAGAAGTA TTGA
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| Protein sequence | MSKYPYPIPS REEILGVLRT SDAPLAANDI AEALSIKRQE REGFFRRVAA MERDGQIRLD
KRGHYQLTHP SNFVAGRVQG HRDGYGFVIR DDGQDDLFLP NGEMQKVMHN DRVLARIVGY
DRRGRPEGHV VEVTERANKR VIGRLLNENG ALIVAPEDKR IGHDILITQN VKKAKVGQVV
VVELTDFPSR HSQPLGRVVE VLGDIDDPGM EIEIAVRKYG VPHEFGQRAL DDAAALPDAV
RPADLRFRVD LRDVPLVTID GEDARDFDDA VYCEPTKVGR GDGYRLIVAI ADVSHYVQPG
SGLDADALER STSVYFPRRV IPMLPEKLSN GLCSLNPQVD RCVLVCDMVI TARGEIKAYQ
FYPAVIHSAA RLTYTEVAAV LSNTKGPEAA RRADLLPHLQ DLYGVYKSLF AARQKRGAID
FDTTETYIVC NSQGKIEQIV PRQRNDAHKL IEECMLAANV CAADFLKRNK HAGLYRVHAG
PTPEKLENLR AFLRGMGLSL GGGEKPHASD YAALMAQIRD RPDAQMLQPM LLRSMQQAVY
SPDNIGHFGL AYEAYAHFTS PIRRYPDLLT HRAIYAILSG KKYTPKAPDG FELNTALSPR
ARAMQQADDE ARGRSRVNTA IWEELGLHCS ANERRADEAS RDVEAWLKCY FMRDKLGEEY
GGMVNGVTSF GIFVQLDTLF IEGLVHVTEL GSDYFQYDEI KNELRGERTG IRYRLSDRVR
VQVSRVDLDA RKIDFRLVRD TPVKAPRPAP APVAVGNGND RGGPRVRSLP PVEEAAPRRK
RTASAPTAAV HDTRAAKKKG GAPAKTAAKK THARKKY
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