| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1457 |
|---|
| Symbol | |
|---|
| ID | 6176910 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1620863 |
|---|
| End bp | 1621693 |
|---|
| Gene Length | 831 bp |
|---|
| Protein Length | 276 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641681214 |
|---|
| Product | TetR family transcriptional regulator |
|---|
| Protein accession | YP_001808161 |
|---|
| Protein GI | 172060509 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1309] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.166824 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGTAA TTCAGGAGGG ACGATCGTCC GCGGGACGGC CGTCCGGGAC GCGGGCACCC
GGCAATCGGC AGGCCGGCGG AACGAAGGCA CGCATCCTCG ATGCGGCCGA GGACCTGTTC
ATCGAGCATG GCTTCGAGGC GATGTCGATG AGGCAGATCA CGTCGCGCGC GGCGGTGAAC
CTGGCCGCGG TCAACTACCA CTTCGGCAGC AAGGAAGCGT TGATCCACGC GATGCTGTCG
CGTCGGCTCG ACCAGCTCAA CCAGGAACGC CTCGGCATCC TCGACCGCTT CGATGCGCAG
CTCGGTGCGC ACATCACTTG CGAGCACGTA CTCGGCGCGA TGTTCATTCC CGCATTGAAG
GCGTCGCGCG ACCCCGATCG CGGCGGCCCC GCGTTCCTTC GCTTGATCGG CCGCGCGTAC
ACCGACCCGT CGCCGTTCGT GCGCAACTTC CTGACCGCGC ACTATGCGAG CGTCGCGGGC
CGCTTCTTCG ATGCGTTCCA GCGCGCGCTG CCGCATCTGC CGCGCACTGA GCTCGGCTGG
CGGCTGCACT TCGCGATCGG CGCGCTGTCC GGCGCGCTGG CCGGTGCCGA AACCGAAAGC
CTGATCGACG AATTCTCGCA ACGCCGCACG ATGAACGACG TGCAGATGAT CGCGCGGCTG
TCGTCGCTGA TCGTCGCCGC GCTGAAGGCG CCGATGCCCG ACAGCACGCA GCTGTCGATC
TTCGCGGCCG TGCTCGACGA TGCGGGCGCG AGCGAAGCGT TCGGGCTGTC GCCGGGTGCG
GGCACAGCCG CGGCCTCGGC CGATACGGCG GCCGCACATT CGGCGAGCTG A
|
|---|
| Protein sequence | MAVIQEGRSS AGRPSGTRAP GNRQAGGTKA RILDAAEDLF IEHGFEAMSM RQITSRAAVN
LAAVNYHFGS KEALIHAMLS RRLDQLNQER LGILDRFDAQ LGAHITCEHV LGAMFIPALK
ASRDPDRGGP AFLRLIGRAY TDPSPFVRNF LTAHYASVAG RFFDAFQRAL PHLPRTELGW
RLHFAIGALS GALAGAETES LIDEFSQRRT MNDVQMIARL SSLIVAALKA PMPDSTQLSI
FAAVLDDAGA SEAFGLSPGA GTAAASADTA AAHSAS
|
|---|
| |