| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1445 |
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| Symbol | |
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| ID | 6178061 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1607919 |
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| End bp | 1609286 |
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| Gene Length | 1368 bp |
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| Protein Length | 455 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641681202 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001808149 |
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| Protein GI | 172060497 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.314248 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACACG ACATCCAATT TGCCGACGGC GCAGCGCCGT TCCCCCAGAC GCAGCAATTC
CACGACATCA AGAATGCCGC GCACGAGCAT TTGCTGACGC GCATCGAGGA ACTGGGCGCA
GAGTTCGGCC GGTGGTCCCG CCAGGCGATC AATCAGTTCG TCGATCTCGA GATCGACAGC
TTCGTGCGCC TGCGCCGCAT TCCGCTCAAC GAGAACGAGG TGCGTGCGAT CGCGGAAGCG
CTGACGAAGG AGCTCGCGGG CTTCGGGCCT ATCGAGGATC TGCTTGCGGA TCCGGCAGTC
GAGGACATCC TGATCAATGG CTACAACGAC GTGTACGTGT CGCGTCACGG GATGCTCGCG
AAGCTGCCGG TACGCTTCAC CGACAACGCG CATTTGCTGC GCATCGTCCG GCGGATCCTT
GCGCCGATCG GGCGCCGTCT CGACGAGTCG AACCCGATGG TCGACGCGCG ACTGCCCGAT
GGTGGCCGTG TGAACGTCGT GATCGAGCCG CTGTCGATCG ACGGCCCGAT CGTGTCGATC
CGGAAGTTCC GCAAGGATCC GCTCAAGCCC TCGGACCTGC TCGGCAACGG CACGTACAAC
GAAGAAATCG GGGCGCTGCT CGAGGCAGCG GTCGAGGCAC GCTGCAACGT GCTCGTATCG
GGTGGCACGA GTTCGGGCAA GACGTCGCTG CTCAACGCGC TCGCATTCCA TATTCCGGAG
GTCGAACGTG TCGTCACGAT CGAGGATACG GCCGAACTGT CGTTGAACCA CCCGCATGTC
GTGCGGCTCG AAAGCCGGCC AGGCGGGTTC GACGGTACCG GCGTCGTGAC GATTCGCGAC
TTGTTGCGCA ACACGCTGCG GATGCGTCCG GATCGGATCA TCGTCGGCGA AGTGCGCGGC
GGCGAAGTGC TCGAAATGCT GCAAGCCATG AACACGGGCC ACGACGGCTC GATGGGCACG
GTGCACGCGA GCTCGCCGCG AGAGTGTCTG TACCGTCTCG AGATGCTCGC CGGTTTCGCG
GGCTTCCAGG GTACCGAGTC GAGCCTGCGC CGCCAGATCG CGAACGCGAT CGACTTCATC
GTGCAGATCG GCCGGCTGTC GAATGGACGC CGCCGCATTC TGTCGATCAC CGAAGTGACC
GGCTTGTCCG ACAACATCAT CGCGACGCAG GAGTTGTATC GCTACGAAGC GCGTGTGACG
CCGGAGGGCG AGGAAGTCGA TCACTGGGAA TCGCTTGGCA TCCATCCGCA TTCGCCGAAG
CTCGCGCGTT TCCGTCAGAC GTTGACGAGC GGCGGGATGG GCGGCGGCGG GTTCGGCGGT
GGCTTTGGCG GCGGCGGTTT CGGCCGCGGC GGGGGCTTCA ATGTATAG
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| Protein sequence | MAHDIQFADG AAPFPQTQQF HDIKNAAHEH LLTRIEELGA EFGRWSRQAI NQFVDLEIDS
FVRLRRIPLN ENEVRAIAEA LTKELAGFGP IEDLLADPAV EDILINGYND VYVSRHGMLA
KLPVRFTDNA HLLRIVRRIL APIGRRLDES NPMVDARLPD GGRVNVVIEP LSIDGPIVSI
RKFRKDPLKP SDLLGNGTYN EEIGALLEAA VEARCNVLVS GGTSSGKTSL LNALAFHIPE
VERVVTIEDT AELSLNHPHV VRLESRPGGF DGTGVVTIRD LLRNTLRMRP DRIIVGEVRG
GEVLEMLQAM NTGHDGSMGT VHASSPRECL YRLEMLAGFA GFQGTESSLR RQIANAIDFI
VQIGRLSNGR RRILSITEVT GLSDNIIATQ ELYRYEARVT PEGEEVDHWE SLGIHPHSPK
LARFRQTLTS GGMGGGGFGG GFGGGGFGRG GGFNV
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