Gene BamMC406_1429 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_1429 
Symbol 
ID6177053 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp1587132 
End bp1588958 
Gene Length1827 bp 
Protein Length608 aa 
Translation table11 
GC content65% 
IMG OID641681186 
ProductGTP-binding protein TypA 
Protein accessionYP_001808133 
Protein GI172060481 
COG category[T] Signal transduction mechanisms 
COG ID[COG1217] Predicted membrane GTPase involved in stress response 
TIGRFAM ID[TIGR01394] GTP-binding protein TypA/BipA
[TIGR00231] small GTP-binding protein domain 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value0.329575 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCCGCG CCCTTCGCAA TATCGCCATC ATCGCCCACG TCGACCACGG CAAGACCACG 
CTCGTCGACC AACTGCTCCG CCAGTCCGGC ACCTTCCGCG AGAACCAGCA GATTGCCGAA
CGGGTGATGG ACTCGAACGA CATCGAAAAA GAGCGCGGGA TCACGATTCT CGCGAAGAAC
TGCGCGGTCG AATACGAAGG CACGCACATC AACATCGTCG ACACGCCGGG GCACGCGGAC
TTCGGCGGCG AAGTGGAGCG CGTGCTGTCG ATGGTCGACT CGGTGCTGCT GCTGGTCGAC
GCGGTCGAAG GCCCGATGCC GCAGACCCGC TTCGTCACGA AGAAGGCGCT CGCGCTCGGC
CTGAAGCCGA TCGTCATCGT CAACAAGATC GATCGTCCGG GTGCGCGGAT CGACTGGGTC
ATCAACCAGA CCTTCGACCT GTTCGACAAG CTGGGCGCGA CCGAAGAGCA GCTCGACTTC
CCGATCGTCT ACGCATCGGG CCTGAACGGC TATGCGTCGC TCGACCCGGC CGCGCGCGAG
GGCGACATGC GCCCGCTGTT CGAGGCGGTC CTCCAGCACG TGCCGGTCCG TCCGGCCGAT
CCGGACGCGC CGCTGCAGTT GCAGATCACG TCGCTCGACT ATTCGACGTA CGTCGGCCGG
ATCGGCGTCG GCCGCATCAC GCGCGGCCGC ATCAAGCCGG GTCAGCCGGT CGCGATGCGC
TTCGGCCCGG AAGGCGATGT GCTGAACCGC AAGATCAACC AGGTGCTGTC GTTCACGGGC
CTCGAGCGCG TGCAGGTCGA CTCCGCCGAA GCAGGCGACA TCGTGCTGAT CAACGGTATT
GAAGATGTCG GCATCGGCGC GACGATCTGC GCGGTGGATA CGCCGGAAGC GCTGCCGATG
ATCACCGTCG ACGAGCCGAC GCTGACGATG AACTTCCTGG TCAACTCGTC GCCGCTGGCC
GGTCGCGAAG GCAAGTTCGT CACGAGCCGC CAGATCCGCG ATCGCCTGAT GAAGGAACTG
AACCACAACG TCGCGCTGCG CGTGAAGGAC ACGGGCGACG AAACGGTGTT CGAAGTGTCG
GGCCGCGGCG AACTGCACCT GACGATTCTC GTCGAAAACA TGCGCCGTGA AGGCTATGAG
CTGGCCGTGT CGCGTCCGCG CGTCGTGATG CAGGAAATCG ACGGCGTGCG CCACGAGCCG
TACGAGTTGC TGACCGTCGA CGTCGAAGAC GAGCACCAGG GCGGCGTGAT GGAAGAGCTT
GGCCGCCGCA AGGGCGAAAT GCTCGACATG GCGTCGGACG GCCGCGGCCG CACGCGTCTG
GAATACAAGA TCTCGGCGCG CGGCCTGATC GGCTTCCAGA GCGAATTCCT GACGCTCACG
CGCGGCACGG GCCTGATGAG CCACATCTTC GACTCGTACG CACCGGTCAA GGACGGCTCG
GTCTTCGAGC GCCGCAACGG CGTGCTGATC TCGCAAGACG ACGGCGCGGC AGTGGCATAC
GCACTGTGGA AGCTGCAGGA TCGCGGCCGC ATGTTCGTGA AGCCGGGCGA CGCGCTGTAT
GAGGGCATGA TCATCGGCAT CCACAGCCGC GACAACGACC TCGTCGTGAA CCCGATCAAG
GGCAAGCAGC TGACCAACGT GCGTGCGTCG GGTACCGACG AAGCCGTGCG TCTCGTGCCG
CCGGTCCAGA TGTCGCTCGA ATACGCGGTC GAATTCATCG ACGACGACGA GCTCGTCGAA
GTGACGCCGC AGTCGATCCG CCTGCGCAAG CGCTTCCTGA AGGAGCACGA GCGTCGCCGC
GCGAGCCGCG AAGGCGCGGT CGACTAA
 
Protein sequence
MTRALRNIAI IAHVDHGKTT LVDQLLRQSG TFRENQQIAE RVMDSNDIEK ERGITILAKN 
CAVEYEGTHI NIVDTPGHAD FGGEVERVLS MVDSVLLLVD AVEGPMPQTR FVTKKALALG
LKPIVIVNKI DRPGARIDWV INQTFDLFDK LGATEEQLDF PIVYASGLNG YASLDPAARE
GDMRPLFEAV LQHVPVRPAD PDAPLQLQIT SLDYSTYVGR IGVGRITRGR IKPGQPVAMR
FGPEGDVLNR KINQVLSFTG LERVQVDSAE AGDIVLINGI EDVGIGATIC AVDTPEALPM
ITVDEPTLTM NFLVNSSPLA GREGKFVTSR QIRDRLMKEL NHNVALRVKD TGDETVFEVS
GRGELHLTIL VENMRREGYE LAVSRPRVVM QEIDGVRHEP YELLTVDVED EHQGGVMEEL
GRRKGEMLDM ASDGRGRTRL EYKISARGLI GFQSEFLTLT RGTGLMSHIF DSYAPVKDGS
VFERRNGVLI SQDDGAAVAY ALWKLQDRGR MFVKPGDALY EGMIIGIHSR DNDLVVNPIK
GKQLTNVRAS GTDEAVRLVP PVQMSLEYAV EFIDDDELVE VTPQSIRLRK RFLKEHERRR
ASREGAVD