| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1426 |
|---|
| Symbol | |
|---|
| ID | 6177134 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 1583464 |
|---|
| End bp | 1584681 |
|---|
| Gene Length | 1218 bp |
|---|
| Protein Length | 405 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641681183 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001808130 |
|---|
| Protein GI | 172060478 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR00998] efflux pump membrane protein (multidrug resistance protein A) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0183071 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGACC CTCAACAAAA CGCCGCCAGC GCACAGCCGC AGAACAACGG GAAGCGCAAA
CGGATGATGA CGCTGCTGAT CGCGGTCATC GTGATCGCGG CCATCGCGTA CGGCCTGTAC
TACTTCCTCG TCGCCCGCTT CCATGAAGAG ACCGACGACG CGTACGTGAA CGGCAACGTC
GTGCAGATCA CGCCGCAGAT CACGGGTACC GTGATCGCCG TGAAGGCCGA CGATACGCAG
ACGGTCAAGG CCGGCGACCC GCTGGTCGTG CTCGATCCGG CCGACTCGCA GGTCGCGCTG
CAGCAGGCCG AGGCCAACCT CGCGCAGACG GTGCGCCAGG TGCGCGGCCT GTTCGTCAAC
GACGATCAAT ACCGTGCGCA AGTCGCGCTG CGCCAGTCCG ACCTGTCGAA GGCGCAGGAC
GACCTGCGCC GCCGCGTGGC CGTCGCGCAG ACGGGCGCCG TGTCGCAGGA AGAAATCTCC
CACGCACGCG ACGCGGTGCG TGCCGCCCAG GCGTCGGTCG ACGCGGCGCA ACAGCAGCTC
GCATCGAACC GCGCGCTGAC CGCGAACACG ACGATCGCGT CGCACCCGAA CGTGATGGCT
GCCGCGGCGA AGGTGCGCGA CGCGTACCTC GCGAACGCGC GTAACGTGCT GCCCGCGCCG
GTCACCGGCT ATGTCGCGAA GCGCTCGGTG CAGGTCGGCC AGCGCGTGTC GCCGGGCAAC
CCGCTGATGT CGGTCGTGCC GCTGAATGCG GTGTGGGTCG ACGCGAACTT CAAGGAAGTC
CAGCTCAAGC ACATGCGCAT CGGCCAGCCG GTCGAGCTGA CGGCCGACAT CTACGGCTCG
TCGGCGGTCT ACCACGGCAA GGTCGTCGGC TTCTCGGCCG GGACGGGCTC GGCGTTCTCG
CTGCTGCCGG CGCAGAACGC GACGGGCAAC TGGATCAAGG TCGTGCAACG CCTGCCGGTG
CGTATCGAGA TCGATCCGAA GGAGCTCGAG AAGCACCCGC TGCGCATCGG CCTGTCGATG
CAGGTCGACG TCAACATCAA GGACGAGCGC GGCGACCAGC TCGCCAACGC GCAGAACACC
GTCTACGAGA CCAATGTGTT CGCGAAGTAC GGCGATGAAG CCGACGCCGA AATCGCACGC
ATCATCGCCG AGAACGCGGG CGGCAACGCG CCGGCACCGG CCGCCGCGAA GGCGAGCGGC
GCCGCCAAGA TGATGTAA
|
|---|
| Protein sequence | MSDPQQNAAS AQPQNNGKRK RMMTLLIAVI VIAAIAYGLY YFLVARFHEE TDDAYVNGNV
VQITPQITGT VIAVKADDTQ TVKAGDPLVV LDPADSQVAL QQAEANLAQT VRQVRGLFVN
DDQYRAQVAL RQSDLSKAQD DLRRRVAVAQ TGAVSQEEIS HARDAVRAAQ ASVDAAQQQL
ASNRALTANT TIASHPNVMA AAAKVRDAYL ANARNVLPAP VTGYVAKRSV QVGQRVSPGN
PLMSVVPLNA VWVDANFKEV QLKHMRIGQP VELTADIYGS SAVYHGKVVG FSAGTGSAFS
LLPAQNATGN WIKVVQRLPV RIEIDPKELE KHPLRIGLSM QVDVNIKDER GDQLANAQNT
VYETNVFAKY GDEADAEIAR IIAENAGGNA PAPAAAKASG AAKMM
|
|---|
| |