| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_1398 |
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| Symbol | |
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| ID | 6176580 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1549786 |
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| End bp | 1552005 |
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| Gene Length | 2220 bp |
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| Protein Length | 739 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641681153 |
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| Product | (p)ppGpp synthetase I, SpoT/RelA |
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| Protein accession | YP_001808102 |
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| Protein GI | 172060450 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
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| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000892312 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 25 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGAGT CCGTTACCGC TTCTTCCGTC ACGGCGCCGT CGTTCGACGA CGTGCTCGCG
TTCGTGCGCG AGCGGGCCGG CGACGCGCGC CTGTCGACGG GCGAACTGCT CGCCGATCAC
TCGGCGGGCA CCGCGTCGAT CATGCGCACG TTGAACGTCG ACCCGCACGC GATGCAGGCG
GCCGCGCTGT TCGTGCTGAC GCCGCACCTG AACGATCCCG AGCGGGAACT GACCGAACGG
TTCGGCGAAG AAGTCGCGCG GCTCGTGTCC GACGTGCGCA AGCTGCTGCG GCTCGGCACC
GTCAGCCTGC GCGCCCAGAA TGCGATGCCT GAAGCCGGGC GCGACGCGGC GGAAGAGCGG
CGCACGCAGA TCGAGGCGCT GCGCAAGATG CTGCTGGCGT TCGCGCAGGA CATCCGCGTG
GTGCTGATCC GGCTGGCGTC GCGGTTGCAG TCGCTGCGGT ATTACGCGGC GGCGAAGATC
GATCCGCCGC CCGACGTCGC GCGCGAGACA CTCGAGATCT ATGCGCCGCT CGCGAACCGT
CTCGGCATCT GGCAACTGAA GTGGGAACTC GAGGATCTCG CGTTCCGCTT CGAGGATCCG
GTCACCTACA AGCGCATCGC CAAGCTGCTC GACGAGAAGC GCGTCGAGCG CGAGGCCTAC
GTCGCCCAGG CGATCGAGCG GCTCCAGCAC GAGCTGGCGG AGGCGCACAT CCCGGCCGAC
GTGAGCGGCC GGCCGAAACA TATCTACAGC ATCTGGCGCA AGATGCGCGG CAAGGAGCTC
GACTTCGCCG AGCTGTACGA CGTGCGGGCG TTCCGCGTGA TCGTGCCGGA CATCAAGGAT
TGCTACGCGG TGCTCGGCAT CGTGCATCAC CTGTGGCAGC CGGTGCCGAA GGAATTCGAC
GACTACATCT CGCGCCCGAA GCCGAACGGC TACAAGTCGC TGCATACGGT CGTGATCGGC
GACGACGGCC GCGCGTTCGA GGTGCAGATC CGCACGCAGG AAATGCACCG CTTCGCGGAG
TACGGCATCG CCGCGCACTG GCGCTACAAG GAAGCCGGCG CGCGCGGCTA TGGCGGCCAG
TTCTCGGCGA GCGACAAGTA CGACGAGAAG ATCGCGTGGC TGCGCCAGCT GCTCGCATGG
AAGGACGACG TCGAAGTGTC GGGCGACCAG GCGTGGGCCC AGCTGCGCGA GACGTCGCTC
GACGACGACC ACATCTACGT ACTGACGCCG CAGGCGCGCG TGATCGCGCT GCCGCAGGGT
GCGACGCCGG TCGATTTCGC GTACCACCTG CACAGCGAGC TCGGCCATCG CTGCCGCGGC
GCGCGCGTCG ACGGCGTGAT GGTGCCGCTG AACACGTCGC TCGCGAACGG CCAGACGGTC
GAGATCGTCG CGGTGAAGGA GGGCGGCCCG TCGCGCGACT GGCTGAACCT GCAGCTCGGC
TACCTGAAGA GTTCGCGCGC GCGACAGAAG GTGCGCGCGT GGTTCAACTC GATCGAGCAG
GAAGAGAACA TCGCGCATGG CCGCGCGCTC GTCGAAAAGA CGCTGCAGCG CGAGGGCAAG
ACGTCGGTCA ATCTCGACAA CCTCGCCGCG AAGCTCGGCT TCAAGTCGCC CGACGAACTG
TTCTCGGTCG TCGGCAAGGA AGAATTCAGC CTGCGCAACG TCGAGCACGC GCTGTCCGAT
GCGCCGCCGC CCGAGCATGC ACCGGAGGCG CCCGCCGATT TCGAGAAGCG CAGCAGCGGC
GCGAGTGTCG CGCACGGCGC GTCGACCGGC GTGCTGGTGG TCGGCGTCGA TGCGCTCTTG
ACCCAGCTTG CGCGCTGCTG CCGTCCGGCG CCGCCCGACC CGATCAGCGG TTTCGTCACG
CGCGGCAAGG GGATGTCGAT CCACCGCAGC GACTGCCCGA CGTTCCGGCG GATGGCCGAA
CGGGCGCCGG AGCGCGTGCT GCAGACGACC TGGTCGGCCG ACGTGCTGGG CGGACGCGGC
GCGTCCGTCT ATCCGGTCGA CCTGATGATC GAGGCGAGCG ACCGGCAAGG CTTGCTGCGC
GACATCTCCG AAGTGTTCGC GCGCGAAAAA ATGAACGTGG TGGGCGTGAA GACGCAGAGC
CGGCGCAATG CGGCGTTCAT GCAGTTCACG GTCGAGGTGT CGAATTCGGC GCAGGTGCAG
CGTGCGTGCA CGCTGCTTGG CGAAGTGCCG GGCGTCGTGC GGGCGGGGCG CAAGACATGA
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| Protein sequence | MTESVTASSV TAPSFDDVLA FVRERAGDAR LSTGELLADH SAGTASIMRT LNVDPHAMQA
AALFVLTPHL NDPERELTER FGEEVARLVS DVRKLLRLGT VSLRAQNAMP EAGRDAAEER
RTQIEALRKM LLAFAQDIRV VLIRLASRLQ SLRYYAAAKI DPPPDVARET LEIYAPLANR
LGIWQLKWEL EDLAFRFEDP VTYKRIAKLL DEKRVEREAY VAQAIERLQH ELAEAHIPAD
VSGRPKHIYS IWRKMRGKEL DFAELYDVRA FRVIVPDIKD CYAVLGIVHH LWQPVPKEFD
DYISRPKPNG YKSLHTVVIG DDGRAFEVQI RTQEMHRFAE YGIAAHWRYK EAGARGYGGQ
FSASDKYDEK IAWLRQLLAW KDDVEVSGDQ AWAQLRETSL DDDHIYVLTP QARVIALPQG
ATPVDFAYHL HSELGHRCRG ARVDGVMVPL NTSLANGQTV EIVAVKEGGP SRDWLNLQLG
YLKSSRARQK VRAWFNSIEQ EENIAHGRAL VEKTLQREGK TSVNLDNLAA KLGFKSPDEL
FSVVGKEEFS LRNVEHALSD APPPEHAPEA PADFEKRSSG ASVAHGASTG VLVVGVDALL
TQLARCCRPA PPDPISGFVT RGKGMSIHRS DCPTFRRMAE RAPERVLQTT WSADVLGGRG
ASVYPVDLMI EASDRQGLLR DISEVFAREK MNVVGVKTQS RRNAAFMQFT VEVSNSAQVQ
RACTLLGEVP GVVRAGRKT
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