| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0950 |
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| Symbol | rimM |
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| ID | 6176279 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 1042211 |
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| End bp | 1042888 |
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| Gene Length | 678 bp |
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| Protein Length | 225 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641680700 |
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| Product | 16S rRNA-processing protein RimM |
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| Protein accession | YP_001807657 |
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| Protein GI | 172060005 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
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| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 30 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGTCCGGTC ACGATTCCGG TAACGCAAAG CGCGGGCGAG CGTCGTTTGG CGCATTCGTC
CGCAAGCCGG TCGAGCGCGA CGTTGTCGCG AGCGCCGGTG AGGCTGCCGA GCAGGGCAGT
CTCGAAGCGG TGCAAGCCTG GCCCGACGAT GCTGTCGAGG TCGGGGCAGT GGTCGACGCC
TATGGCCTGA AAGGCTGGAT CAAGGTGGCG ACGCATGCCG ACGCCGGTCG CGGCGGCGAT
GCGCTGCTCG ACGCGCGCCG CTGGTGGCTG GAGCGGGGTG GGGAACGGTT GTCCGCCCGC
ATCCTGCAGT CGAAAACGCA CGGCGACACT GTCGTCGCGC ATGCCGCGGG TGTCAGCGAC
CGCGATGCCG CATTGGCTTT GCGCGGCTTT CGCGTGTTCG TGCGCCGGGA AGATTTCCCG
GAATTGGCCG CGGACGAATT CTATTGGGTC GACCTGATCG GTCTCGAGGT CGTCAACGAG
CAATCGGTGG CGCTTGGGAC AGTGAGCGGG ATGATCGACA ACGGCGTGCA TTCGATCATG
CGCGTCGAGT ATCCGGCAGT CGGCAAGGAT GGTCAGCCGA CCACCGACGA ACGGCTGATT
CCGTTCGTCG GCGTATACGT CAAGACGGTG GATCAGGCGG CACGTCGCAT CGTCGTCGAC
TGGGAAGCCG ATTACTAA
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| Protein sequence | MSGHDSGNAK RGRASFGAFV RKPVERDVVA SAGEAAEQGS LEAVQAWPDD AVEVGAVVDA
YGLKGWIKVA THADAGRGGD ALLDARRWWL ERGGERLSAR ILQSKTHGDT VVAHAAGVSD
RDAALALRGF RVFVRREDFP ELAADEFYWV DLIGLEVVNE QSVALGTVSG MIDNGVHSIM
RVEYPAVGKD GQPTTDERLI PFVGVYVKTV DQAARRIVVD WEADY
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