Gene BamMC406_0904 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0904 
Symbol 
ID6178700 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp993758 
End bp995596 
Gene Length1839 bp 
Protein Length612 aa 
Translation table11 
GC content72% 
IMG OID641680654 
ProductTPR repeat-containing protein 
Protein accessionYP_001807611 
Protein GI172059959 
COG category[R] General function prediction only 
COG ID[COG0457] FOG: TPR repeat 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.587904 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.769196 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTCCG CATTCGACCG AGCGTATGCC GCGCACCGCG CGGGGCGCCT CGCCGAGGCC 
GAGCACGGCT ACCGTGCCGC GCTCGGCACC AATCCCGCCG ACGCCGACGC GCTGCATCTG
TTCGGCGTGC TGCGGCATCA GCAGGGCCAG CATGCCGAGG CAGCCGATCT CGTCGGGCGT
GCGGTCGAAT TGCGCCCGGG CGACGCCGCG CTCCAGCTCA ATCTCGGCAA CGCGCTGAAG
GCGCTCGGCC GGCTCGACGA AGCGATCGAG CGGTTTCGCA ACGCGCTGAC GCTCGCGCCC
GAATTCCCGC TCGCGCACTA CAATCTCGGC AACGCTTACG CGGCGCTGCA GCGCCACGAA
GATGCCGTCG ACGCGTTCGG CCGCGCACTT CGCCTCACGC CCGACGACGC ATCGATCCAC
AACAATCTCG GCAACGCGCT GAACGCGCTC GGCCGTCACG ACGATGCGCT CGCCGCGTTC
CATCGCGCGC TCGAGCTGCG GCCCGGACAT GCCGGCGCGC ACAACAATCT CGCGATGGCG
CTGAACGCGA TGGGCCGCGC CGACGACGCG ATCGAGCACT TCCAGGCGGC GATCGCCGCG
CAGCCGCGCT TCGTCGCCGC GCACTTCAAT CTCGGCAACA CGTTCGAGGC GCTCGGCCGT
CACGACGAAG CCGCGGCGGC GTTCGAAGCC GCACTCGCGC TGCACCCGCC GTTCCCGCTC
GCCCTGTTCG GGCTCGCGAA CGCGCTGAGC GCGCTCGGGC GCCAGCGCGA AGCGCTGCCT
TACTACGAAC GCGCGGTCGG CCTCGATCCG TCGTTCAGTC TCGCGTGGCT GAACCTCGGC
AATGCGCATC ACGCACTCGG CGCGCACGAA ATGGCGCTGC GCGCGTTCGA CCAGGCGCTG
CGCGTCGCGC CCGACCTGAA GCTCGCGCAA CTGCACCGCG CGGTCACGCT GCTGACGCTG
GGCGACTTCA CGCGCGGCCT GCCCGCGTAC GAAACGCGCC ACGACACGCC GGGCGCGACG
CCGCTCGGCA CGCTGCCGCG CTGGCAAGGC GAGCCGATTG CGTCGCGCAC GCTGCTGATC
CGCGCGGAAC AAGGCTTCGG CGACACGCTG CAGTTCGTCC GCTTCGTGCC GCTGGCCCGC
GCGCGCTGCG CGCGCGTCGT GCTCGAAGTA CAGCCGGAGC TCGTCGCACT GCTCGCGCCG
GCGGCCACGC GCTGGCGCGT GACGCTCGTC GCACAGGGCG CGGCGAAGCC GCCGGCGGCG
GACGTCGCGT GCACGCTGAT GAGCCTGCCT TTCCTGCTCG GTCTGCAGCC GTCCGACATC
GTCGCGCGCA AGCGTTACCT CGACGCGCCG GACAGCGCGC GCCGGCGCTT TCGCGGCTCG
CTCGGCGGCC AGTCGAAGCG CAAGTTCGGC CTCGCGTGGT CGGGGCGCCG CCAGGCGCAG
GAAAACCGCT CGATGCCGTT CGACGCGCTC GCACCGCTGC TCGCGCTGCC GGACATCGAT
TGGGTCGTGC TGCAGCCCGC GCTCGACGAA GACGAACGGG CGCGCGTCGA CGCGCATCCG
CGCGTGCATC ACCTCGACGG GCGGCTGAAC GACTTCGCCG ACACGGCCGC GCTGATCGAA
CGGCTCGACG GCGTCGTCAC GATCGATACG GCCGTCGCGC ATCTGGCGGG CGCGCTCGGC
AAGCCGCTGT GGATCATGCT GCCGTTCGCG CCCGACTGGC GCTGGTTCAC CGGCCACGAC
TGTCCGTGGT ATCCGCACGC GAGGCTGGCC CGCCAGTCCG CACCGGGACA ATGGCTCGAC
GTGGCGGCGA CGGTCGCCGA CGCGCTGCGC GCCGCGTGA
 
Protein sequence
MDSAFDRAYA AHRAGRLAEA EHGYRAALGT NPADADALHL FGVLRHQQGQ HAEAADLVGR 
AVELRPGDAA LQLNLGNALK ALGRLDEAIE RFRNALTLAP EFPLAHYNLG NAYAALQRHE
DAVDAFGRAL RLTPDDASIH NNLGNALNAL GRHDDALAAF HRALELRPGH AGAHNNLAMA
LNAMGRADDA IEHFQAAIAA QPRFVAAHFN LGNTFEALGR HDEAAAAFEA ALALHPPFPL
ALFGLANALS ALGRQREALP YYERAVGLDP SFSLAWLNLG NAHHALGAHE MALRAFDQAL
RVAPDLKLAQ LHRAVTLLTL GDFTRGLPAY ETRHDTPGAT PLGTLPRWQG EPIASRTLLI
RAEQGFGDTL QFVRFVPLAR ARCARVVLEV QPELVALLAP AATRWRVTLV AQGAAKPPAA
DVACTLMSLP FLLGLQPSDI VARKRYLDAP DSARRRFRGS LGGQSKRKFG LAWSGRRQAQ
ENRSMPFDAL APLLALPDID WVVLQPALDE DERARVDAHP RVHHLDGRLN DFADTAALIE
RLDGVVTIDT AVAHLAGALG KPLWIMLPFA PDWRWFTGHD CPWYPHARLA RQSAPGQWLD
VAATVADALR AA