Gene BamMC406_0873 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0873 
Symbol 
ID6178541 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp959460 
End bp961826 
Gene Length2367 bp 
Protein Length788 aa 
Translation table11 
GC content65% 
IMG OID641680619 
Product(p)ppGpp synthetase I, SpoT/RelA 
Protein accessionYP_001807580 
Protein GI172059928 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.777119 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACCA CCCCATCGTC CGCCTCCGCG GATTCGACCA CCGAAGCCAC GGCCCGGTCA 
CCTGCGCGCC AGTACATCGA CGCGGTCCTC GAACAGTCCT TCCGGCATCT GTTCGGGCCG
ACCGCCACGC CGGAGCAGCC GCGCAAGCAC GGCGTCGTTT CGATCGCGAA ACTGACGGCC
GCGCTTGCCG AGTATCTCCC TCCGGAAGAA ATCAAAGAGG TCAAGGCGGC GTTCCACTTC
AGCGACGAAG CCCACCTCGG TCAATATCGC CAGAGCGGCG AACCCTACAT CACCCATCCT
GTCGCCGTCG CGGAAATCTG CGCCGGCTGG AAGCTCGACG CGCAAGCCGT GATGGCCGCG
TTGCTGCACG ACGTGATGGA AGACCAGGGC GTGACCAAGA GCGAGCTCGC CGAACGCTTC
GGCCCGAAGG TCGCCGAACT GGTCGACGGC CTGTCGAAGC TCGACAAGAT GGAGTTCCGC
AGCCGCGAGG AAGCGCAGGC GGAAAACTTC CGCAAGATGC TGCTCGCGAT GGCGCGCGAC
GTGCGCGTCA TCCTCGTCAA GCTCGCCGAC CGTCTGCACA ACATGCGCAC GCTCGGCGCG
GTGCCGATGG AAAAGCGCCG CCGCGTCGCC CGCGAGACGC TCGACATCTA TGCGCCGATC
GCGCACCGCC TCGGGTTGAA CAACACGTAT CGCGAGCTGC AGGACATGAG CTTCGCGAAT
TTCAACCCGC ATCGCTACGC GACGCTCGAG AAGGCCGTGA AGGCCGCGCG CGGCAATCGC
CGCGAAGTGA TCAGCAAGAT CCTCGAGTCC GCGCAGCGCG CGATGAGCGA CGCGAAGATC
GACGCCGAGA TCACCGGCCG CGAAAAGACG ATCTACAGCA TCTACCGCAA GATGCGCGAC
AAGCAGCTGT CGTTCTCGCA GGTGCTCGAC GTGTACGGCT TTCGCGTCGT CGTCGATAGC
CCGCTCGACT GCTACACGTG CATCGGCGCG CTGCACGCGC TGTACAAGCC CGTGCCCGGC
AAGTTCAAGG ACTACATCGC GATCCCGAAG ATCAACGGCT ATCAGTCGCT GCACACGACG
CTCGTCGGCC CGTTTGGCGC GCCGATCGAG TTCCAGGTAC GCACGCGCAA GATGCACGAG
ATCGCCGAGG CCGGCGTGGC CGCGCACTGG CTGTACAAGA ACGGCGGCGC CGATCTGAAC
GACGTGCAGA AGCGCGCGCA CCAGTGGCTG AAGTCACTGC TCGACATTCA GAGCGAAGCC
GGCGATTCGA GCGAATTCCT CGAGCACGTG AAGATCGACC TGTTCCCGGA TGCGGTCTAC
GTGTTCACGC CGAAGTCGAA GATCATGGCG CTGCCGCGCG GTGCGACGGC GCTCGATTTC
GCATATTCGA TCCACAGCGA TCTCGGCAAC CAGTGCGTGG CCGTGAAGAT CAACAACGAG
CTGCTGCCGC TGCGCACCGA GCTGAAGAGC GGCGACATCG TCGAGGTGAT CACCGCGCCG
TATTCGAAGC CGAACCCCGC GTGGCTCGGT TTCGTGCGCA CCGGCAAGGC ACGCTCGGCG
ATTCGTCACT ACCTGAAGAC GATGCGCCTG AACGAGTCGG TGCAGCTCGG CGAGCGGCTT
GTCGACCAGA GCCTGAAGGG TTACGGGCTT GCGCTGGCCG ACGTGGCGCC GGAAGTGTGG
GAGAAGCTCG TGCAGTGGAC GGGCAACAAG AGCCGCCAGG AAATCTTCGC GGACATCGGC
CTCGGCCGCC GCGTCGCCGC GGTGATGGCC AAGCGCATCG AGGTGCTGAC GAGCGGGCGC
GATGCGGACG ACGATCTGCC GAAGTCCGAG CGGCATCCCG CGCACAATGC GCCGCCGGTC
GTCATTACCG GCACCGAGGG GATGTCCGTG CAGCTGTCGG CATGCTGCCG GCCGATTCCG
GGTGATGCGA TCATGGGCTA TATCGGCATC GGCCTCGGGA TGGCGATTCA TACGACCGAT
TGCCGTGTCG CGCAGCGCAT CCATCGCCGC GATCCGGGCC GCTGGATCGA CGTCGAGTGG
GCGCCGCAGC CGGGCCGCCT GTTCGACGTC GCGGTGAAGG CGCTCGTGAA GAACACGAAG
GGCATCTTCG CGCGCGTGGC GGCGGACATC ACGTCGGCCG ACGCGAACAT CGTCCACATC
GCCATGGACG AGGATCTGAC GCACGAATCG ACCGTGCTGC GCTTCGTGAT CCAGGTCAGC
GATCGCGTGC ACCTGGCGAA CGTGATGCGG CGTGTGCGGA CCAATCCGGA CGTGATGCGG
ATCATGCGCG AGCGCTCGAC CGACGACAGC GTGCATGCGC GTCACGACGG CGGCATGCGC
ATCGAGCGCG AACGGCAGGA TTACTGA
 
Protein sequence
MSTTPSSASA DSTTEATARS PARQYIDAVL EQSFRHLFGP TATPEQPRKH GVVSIAKLTA 
ALAEYLPPEE IKEVKAAFHF SDEAHLGQYR QSGEPYITHP VAVAEICAGW KLDAQAVMAA
LLHDVMEDQG VTKSELAERF GPKVAELVDG LSKLDKMEFR SREEAQAENF RKMLLAMARD
VRVILVKLAD RLHNMRTLGA VPMEKRRRVA RETLDIYAPI AHRLGLNNTY RELQDMSFAN
FNPHRYATLE KAVKAARGNR REVISKILES AQRAMSDAKI DAEITGREKT IYSIYRKMRD
KQLSFSQVLD VYGFRVVVDS PLDCYTCIGA LHALYKPVPG KFKDYIAIPK INGYQSLHTT
LVGPFGAPIE FQVRTRKMHE IAEAGVAAHW LYKNGGADLN DVQKRAHQWL KSLLDIQSEA
GDSSEFLEHV KIDLFPDAVY VFTPKSKIMA LPRGATALDF AYSIHSDLGN QCVAVKINNE
LLPLRTELKS GDIVEVITAP YSKPNPAWLG FVRTGKARSA IRHYLKTMRL NESVQLGERL
VDQSLKGYGL ALADVAPEVW EKLVQWTGNK SRQEIFADIG LGRRVAAVMA KRIEVLTSGR
DADDDLPKSE RHPAHNAPPV VITGTEGMSV QLSACCRPIP GDAIMGYIGI GLGMAIHTTD
CRVAQRIHRR DPGRWIDVEW APQPGRLFDV AVKALVKNTK GIFARVAADI TSADANIVHI
AMDEDLTHES TVLRFVIQVS DRVHLANVMR RVRTNPDVMR IMRERSTDDS VHARHDGGMR
IERERQDY