Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0873 |
Symbol | |
ID | 6178541 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 959460 |
End bp | 961826 |
Gene Length | 2367 bp |
Protein Length | 788 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 641680619 |
Product | (p)ppGpp synthetase I, SpoT/RelA |
Protein accession | YP_001807580 |
Protein GI | 172059928 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 0.777119 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCACCA CCCCATCGTC CGCCTCCGCG GATTCGACCA CCGAAGCCAC GGCCCGGTCA CCTGCGCGCC AGTACATCGA CGCGGTCCTC GAACAGTCCT TCCGGCATCT GTTCGGGCCG ACCGCCACGC CGGAGCAGCC GCGCAAGCAC GGCGTCGTTT CGATCGCGAA ACTGACGGCC GCGCTTGCCG AGTATCTCCC TCCGGAAGAA ATCAAAGAGG TCAAGGCGGC GTTCCACTTC AGCGACGAAG CCCACCTCGG TCAATATCGC CAGAGCGGCG AACCCTACAT CACCCATCCT GTCGCCGTCG CGGAAATCTG CGCCGGCTGG AAGCTCGACG CGCAAGCCGT GATGGCCGCG TTGCTGCACG ACGTGATGGA AGACCAGGGC GTGACCAAGA GCGAGCTCGC CGAACGCTTC GGCCCGAAGG TCGCCGAACT GGTCGACGGC CTGTCGAAGC TCGACAAGAT GGAGTTCCGC AGCCGCGAGG AAGCGCAGGC GGAAAACTTC CGCAAGATGC TGCTCGCGAT GGCGCGCGAC GTGCGCGTCA TCCTCGTCAA GCTCGCCGAC CGTCTGCACA ACATGCGCAC GCTCGGCGCG GTGCCGATGG AAAAGCGCCG CCGCGTCGCC CGCGAGACGC TCGACATCTA TGCGCCGATC GCGCACCGCC TCGGGTTGAA CAACACGTAT CGCGAGCTGC AGGACATGAG CTTCGCGAAT TTCAACCCGC ATCGCTACGC GACGCTCGAG AAGGCCGTGA AGGCCGCGCG CGGCAATCGC CGCGAAGTGA TCAGCAAGAT CCTCGAGTCC GCGCAGCGCG CGATGAGCGA CGCGAAGATC GACGCCGAGA TCACCGGCCG CGAAAAGACG ATCTACAGCA TCTACCGCAA GATGCGCGAC AAGCAGCTGT CGTTCTCGCA GGTGCTCGAC GTGTACGGCT TTCGCGTCGT CGTCGATAGC CCGCTCGACT GCTACACGTG CATCGGCGCG CTGCACGCGC TGTACAAGCC CGTGCCCGGC AAGTTCAAGG ACTACATCGC GATCCCGAAG ATCAACGGCT ATCAGTCGCT GCACACGACG CTCGTCGGCC CGTTTGGCGC GCCGATCGAG TTCCAGGTAC GCACGCGCAA GATGCACGAG ATCGCCGAGG CCGGCGTGGC CGCGCACTGG CTGTACAAGA ACGGCGGCGC CGATCTGAAC GACGTGCAGA AGCGCGCGCA CCAGTGGCTG AAGTCACTGC TCGACATTCA GAGCGAAGCC GGCGATTCGA GCGAATTCCT CGAGCACGTG AAGATCGACC TGTTCCCGGA TGCGGTCTAC GTGTTCACGC CGAAGTCGAA GATCATGGCG CTGCCGCGCG GTGCGACGGC GCTCGATTTC GCATATTCGA TCCACAGCGA TCTCGGCAAC CAGTGCGTGG CCGTGAAGAT CAACAACGAG CTGCTGCCGC TGCGCACCGA GCTGAAGAGC GGCGACATCG TCGAGGTGAT CACCGCGCCG TATTCGAAGC CGAACCCCGC GTGGCTCGGT TTCGTGCGCA CCGGCAAGGC ACGCTCGGCG ATTCGTCACT ACCTGAAGAC GATGCGCCTG AACGAGTCGG TGCAGCTCGG CGAGCGGCTT GTCGACCAGA GCCTGAAGGG TTACGGGCTT GCGCTGGCCG ACGTGGCGCC GGAAGTGTGG GAGAAGCTCG TGCAGTGGAC GGGCAACAAG AGCCGCCAGG AAATCTTCGC GGACATCGGC CTCGGCCGCC GCGTCGCCGC GGTGATGGCC AAGCGCATCG AGGTGCTGAC GAGCGGGCGC GATGCGGACG ACGATCTGCC GAAGTCCGAG CGGCATCCCG CGCACAATGC GCCGCCGGTC GTCATTACCG GCACCGAGGG GATGTCCGTG CAGCTGTCGG CATGCTGCCG GCCGATTCCG GGTGATGCGA TCATGGGCTA TATCGGCATC GGCCTCGGGA TGGCGATTCA TACGACCGAT TGCCGTGTCG CGCAGCGCAT CCATCGCCGC GATCCGGGCC GCTGGATCGA CGTCGAGTGG GCGCCGCAGC CGGGCCGCCT GTTCGACGTC GCGGTGAAGG CGCTCGTGAA GAACACGAAG GGCATCTTCG CGCGCGTGGC GGCGGACATC ACGTCGGCCG ACGCGAACAT CGTCCACATC GCCATGGACG AGGATCTGAC GCACGAATCG ACCGTGCTGC GCTTCGTGAT CCAGGTCAGC GATCGCGTGC ACCTGGCGAA CGTGATGCGG CGTGTGCGGA CCAATCCGGA CGTGATGCGG ATCATGCGCG AGCGCTCGAC CGACGACAGC GTGCATGCGC GTCACGACGG CGGCATGCGC ATCGAGCGCG AACGGCAGGA TTACTGA
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Protein sequence | MSTTPSSASA DSTTEATARS PARQYIDAVL EQSFRHLFGP TATPEQPRKH GVVSIAKLTA ALAEYLPPEE IKEVKAAFHF SDEAHLGQYR QSGEPYITHP VAVAEICAGW KLDAQAVMAA LLHDVMEDQG VTKSELAERF GPKVAELVDG LSKLDKMEFR SREEAQAENF RKMLLAMARD VRVILVKLAD RLHNMRTLGA VPMEKRRRVA RETLDIYAPI AHRLGLNNTY RELQDMSFAN FNPHRYATLE KAVKAARGNR REVISKILES AQRAMSDAKI DAEITGREKT IYSIYRKMRD KQLSFSQVLD VYGFRVVVDS PLDCYTCIGA LHALYKPVPG KFKDYIAIPK INGYQSLHTT LVGPFGAPIE FQVRTRKMHE IAEAGVAAHW LYKNGGADLN DVQKRAHQWL KSLLDIQSEA GDSSEFLEHV KIDLFPDAVY VFTPKSKIMA LPRGATALDF AYSIHSDLGN QCVAVKINNE LLPLRTELKS GDIVEVITAP YSKPNPAWLG FVRTGKARSA IRHYLKTMRL NESVQLGERL VDQSLKGYGL ALADVAPEVW EKLVQWTGNK SRQEIFADIG LGRRVAAVMA KRIEVLTSGR DADDDLPKSE RHPAHNAPPV VITGTEGMSV QLSACCRPIP GDAIMGYIGI GLGMAIHTTD CRVAQRIHRR DPGRWIDVEW APQPGRLFDV AVKALVKNTK GIFARVAADI TSADANIVHI AMDEDLTHES TVLRFVIQVS DRVHLANVMR RVRTNPDVMR IMRERSTDDS VHARHDGGMR IERERQDY
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