| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0699 |
|---|
| Symbol | |
|---|
| ID | 6178227 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 785254 |
|---|
| End bp | 786000 |
|---|
| Gene Length | 747 bp |
|---|
| Protein Length | 248 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641680447 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_001807411 |
|---|
| Protein GI | 172059759 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4221] Short-chain alcohol dehydrogenase of unknown specificity |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGTGT TCGTCACAGG CGCGTCCGCC GGCTTCGGCG CCGCCATCGC CCGAGCCTTC
GTCAAGGGCG GCCACCGCGT CGTCGCAACC GCGCGCCGCA AGGATCGTCT CGATGCGCTC
GCGGCCGAAC TCGGCGACGC GCTGCTGCCG TTCGAGCTCG ACGTGCGCGA CCGCACAGCC
GTCGAAGCCG TGCCGGCCGT ACTTCCCGCC GAATTCGCCG CGCTCGACGT GCTCGTCAAC
AACGCCGGTC TCGCGCTTGG CGTCGAGCCG GCGCACAAGG CGAGCCTCGA CGAGTGGCAA
ACCATGATCG ACACGAACTG CTCGGGCCTC GTGACCGTCA CGCACGCGTT GCTGCCCGGA
ATGATCGCGC GAGGCCGCGG CCACATCTTC AATCTCGGTT CGGTGGCAGG TACCTATCCG
TACCCGGGCG GCAACGTATA CGGCGCGACC AAGGCTTTCG TCAGACAATT CAGTCTGAAC
TTGCGCGCCG ATCTGATCGG CACGCCGTTG CGCGTCACGG ATATCGAGCC GGGCCTGTGC
GGCGGCACGG AATTCTCGAA CATCCGCTTC CGTGGGGACG ACGAGAAGGC GGCCAACGTC
TACCAGAACG TCCAGCCGCT CACGGCCGAG GACATCGCCG ACACGATCTA CTGGATCGCG
ACGCGCCCCG CGCACGTCAA CATCAACACG ATCGAGATGA TGCCGGTCGC CCAGGCGCCG
GCCGGCCTCG CGATCCATCG CGGCTGA
|
|---|
| Protein sequence | MIVFVTGASA GFGAAIARAF VKGGHRVVAT ARRKDRLDAL AAELGDALLP FELDVRDRTA
VEAVPAVLPA EFAALDVLVN NAGLALGVEP AHKASLDEWQ TMIDTNCSGL VTVTHALLPG
MIARGRGHIF NLGSVAGTYP YPGGNVYGAT KAFVRQFSLN LRADLIGTPL RVTDIEPGLC
GGTEFSNIRF RGDDEKAANV YQNVQPLTAE DIADTIYWIA TRPAHVNINT IEMMPVAQAP
AGLAIHRG
|
|---|
| |