| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0696 |
|---|
| Symbol | |
|---|
| ID | 6178761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 783377 |
|---|
| End bp | 783826 |
|---|
| Gene Length | 450 bp |
|---|
| Protein Length | 149 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641680444 |
|---|
| Product | protein TolR |
|---|
| Protein accession | YP_001807408 |
|---|
| Protein GI | 172059756 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0848] Biopolymer transport protein |
|---|
| TIGRFAM ID | [TIGR02801] TolR protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.219875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGGAA GTCCCATTCG ATCCAGCATG CGCGGCGGCC GTTCGCGCCG CGCGATGGCC
GACATCAACG TCGTACCGTA CATCGACGTG ATGCTGGTGC TGCTCGTGAT CTTCATGGTC
ACGGCGCCGC TCGTGGCCCC ATCGATCATC AATCTGCCGA CCGTCGGCAA TGCGGCGCCA
CAGGAACAGA CGCCGCCCGT CGTCGTCAAC ATCAAGGCCG ACCGCACGAT GAGCGTCAAG
TACAAGGGCG ACTCCGGCGC GACGCAGGAA GACACGATGA CCAAGGCCGA GCTCGACAGC
TTCATGTCGG CCCGGCAGGC CGATCATCCC GACCAGCCGG TCGTGATCGC GGCCGACAAG
ACCGTACAGT ACGATGCGGT CATGACCGTG ATGTCGGATC TGAAGGCGCG CGGCGTCAAG
CGCGTCGGCC TCCTCGTCAA ATCGCAATGA
|
|---|
| Protein sequence | MAGSPIRSSM RGGRSRRAMA DINVVPYIDV MLVLLVIFMV TAPLVAPSII NLPTVGNAAP
QEQTPPVVVN IKADRTMSVK YKGDSGATQE DTMTKAELDS FMSARQADHP DQPVVIAADK
TVQYDAVMTV MSDLKARGVK RVGLLVKSQ
|
|---|
| |