| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0549 |
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| Symbol | |
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| ID | 6176088 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 619435 |
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| End bp | 620247 |
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| Gene Length | 813 bp |
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| Protein Length | 270 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641680297 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_001807262 |
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| Protein GI | 172059610 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.00753595 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.67708 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCATCG AAACTTCCGC GCAGGATTCG CGCGCCGCGA GCGACGCGCG CTATGCGCGC
TACCCGAGCC TCGCGGATCG CGCGGTGCTG ATCACGGGCG GCGCGACCGG GATCGGCGCG
GCGTTCGTCG AGCACTTCGC ACGGCAGGGC GCGCGCGTCG CGTTCGTCGA TCTCGACGCG
CAGGCGGGCC AGGCGCTCGC GGAAAGTGTC GCGCAGATGC CGGAGGTACG CCACGCGCCG
CTGTTCCTGC CATGCGACCT GACCGACATC GACGCGCTGC GCCATGCGAT CGACGCGATC
CGCGCGCGGA TCGGCGCGAT CGCGGTGCTC GTGAACAACG CGGCGAACGA CACGCGCCAC
GCGATCGCCG ACGTCACACC GGCGTCGTTC GACGCGGGGA TCGCCGTGAA CCTGCGCCAC
CAGTTCTTCG CCGCGCAGGC GGTGATCGAC GACATGAAGC AGCGCGGCGG CGCGATCATC
AATCTCGGCT CGATCAGCTG GATGCTGAAG AACGGCGGCT ATCCCGTCTA CGTGATGGCG
AAGGCGGCCG TGCAGGGGCT CACGCGCGGG CTCGCGCGCG ATCTCGGCCC GTTCGGGATC
CGCGTGAATT CGCTGGTGCC CGGCTGGGTG ATGACCGACA AGCAGCGCAA GCTCTGGCTC
GACGACGCGG GCCGCGCGGC GATCAAGGCG GGCCAGTGCA TCGACGCCGA GCTGCTGCCG
GACGATCTCG CGCGCATGGC GCTGTTTCTC GCGGCCGACG ACAGCCGGAT GATCACCGCG
CAGGACGTGG TGGTCGACGG CGGCTGGGCC TGA
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| Protein sequence | MTIETSAQDS RAASDARYAR YPSLADRAVL ITGGATGIGA AFVEHFARQG ARVAFVDLDA
QAGQALAESV AQMPEVRHAP LFLPCDLTDI DALRHAIDAI RARIGAIAVL VNNAANDTRH
AIADVTPASF DAGIAVNLRH QFFAAQAVID DMKQRGGAII NLGSISWMLK NGGYPVYVMA
KAAVQGLTRG LARDLGPFGI RVNSLVPGWV MTDKQRKLWL DDAGRAAIKA GQCIDAELLP
DDLARMALFL AADDSRMITA QDVVVDGGWA
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