Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0406 |
Symbol | |
ID | 6178366 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 453673 |
End bp | 455508 |
Gene Length | 1836 bp |
Protein Length | 611 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641680148 |
Product | type VI secretion protein |
Protein accession | YP_001807119 |
Protein GI | 172059467 |
COG category | [S] Function unknown |
COG ID | [COG3519] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR03359] type VI secretion protein, VC_A0110 family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 0.65912 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAAGAAT TGCTGCCGTA TTACGAGCGC GAATTATCGT TTTTGCGGCG CTATTCGCGA GATTTCGCCG AACGCTATCC GAAGATCGCC GCGCGGCTCG CGTTGTCCGG CGAGCACTGC GAGGATCCGC ACGTCGAGCG GATGATCGAG TCGTTCGCGC TGCTGGGCGC GCGCATCAAC AAGAAGCTCG ACGACGACTA CCCGGAATTC ACCGAAGCGC TGCTGGAAGT GCTGTATCCG CACTACCTGC GGCCGTTCCC GTCGTGCTCG ATCGCGCAAT TCACGCCGGC TTCGCCCGGC CAGCAGACCG AACCGGTCGT GATCGACCGC GGCACCGAGC TGAAGAGCCG TCCGATCCGC GGCGTGCAGT GCCGGTTCCG CACCGCGTAC GACGTGACGC TCGCGCCGAT CCGCATTTCG GAGGCGCGCT ACATGCCGGT CGCGCTCGCG CCGAGCGCGA CGGTGCTGCC GTCCAACGCG ACGGGCGTGA TCTCGATCAC GTTCGAATCG CTTGCCGCGC AGCTCGATCT CGGCGCGCTG AAGCTGCCGA CGCTGCGCGC GCACCTGCAC GGCGAACAGT CGTTCGTCGC CGCGCTGACC GACTGCCTGT TCGTCAACGT GCTCGGCGCG TATGTCGAGC CCGAGCGCAA CGGCCGCTGG ACCGCGCTGC GCAAGCTGCC GATCGCGCAC GCCGGCTTCG ACGAGGACGA CGCGCTGATC GACTACCCGG CGAAGTCGCA CCCCGCCTAT CGCCTGCTCA CCGAATACTT CGCATTCCCC GACAAGTTCG ATTTCGTCGA TTTCGACGTC GCGGCGATCG CGCGCGCGGC GGGCCGCTGC CAGCGCGCGA CGCTGCATCT GGTGCTGCAG GACGTGCGCA GCGATTCGCA CGTCGCGCGG CTGCTCGAGC TGCTGACGGC CAGCCATTTC CGGCTGTTCT GCACGCCGAT CGTCAACCTG TTCCGCCAGC ACGGCGAGCC GATCCGCATC ACGCACCGCG CTGTGTCGTA CCCGGTGATC GCCGAAGCGC GCCGGGCGTT CGCGTACGAG GTGTATTCGA TCGATTCGGT GAAGCTCGTC CGGCAGCAGG CGCACGAGGA ATCGGTGATC GAGTTCCGGC CGTTCTATTC GCTGCATCAC GGCGAATCGG CGCGGATCGG TCATTACTGG TTCGCGCGCC GCAACGACTG GGTCGCGCAG AAAAGCCCCG GATACGAAAC GGAGATCTCG ATCGTCGACA TCGACTTCGA GCCGACGTCG CCGCAGACCG ACACGCTGAG CCTCGACCTC ACCTGCACGA ACCGCGATCT GCCGTCGATG CTCGCGTTCG GCCTCGAAGG CGGCGACCTG TTCCAGGAAG GCGGCGCGCA GACGAGCGGC ATCTCGCTGC TGCGGCGCCC GACCCAGAGC GTGCGTTTCG AGCGCGGCCG CGCCGCGCAC TGGCGGCTCG TGTCGCACCT CGCGCTGAAC CACGTGTCGC TGGTCGCGCA CGGGCTCGCG CCGCTCAAGG AAATGCTGAC GCTGTACGAC CTGCGGCGCA CCGCCGTGTC GATGCGCCAG ATCGACGGCC TCGTCGGCGT CGAGCAGCGC GGCGCCGTGC AGTGGCTGCC CGGCAAGCCG TTCGCGACCT TCGTGCGCGG CATCGAGATC CGGCTGACGA TCGACGAGGA GCACTTCGTC GGCGCGAGCC TCGCGTCGTT CGTGCGCGTG CTCGACAGCT TCTTCGGGCT GTATGTCCAC CTCAACAGTT TCGTTCAACT AGTCGTGGTG TCGAAGCGCA CCGGCGAGGA GATCATCCGA TGCAAGCCCC GAACCGGCGA ATCGATCCTG GCGTAG
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Protein sequence | MEELLPYYER ELSFLRRYSR DFAERYPKIA ARLALSGEHC EDPHVERMIE SFALLGARIN KKLDDDYPEF TEALLEVLYP HYLRPFPSCS IAQFTPASPG QQTEPVVIDR GTELKSRPIR GVQCRFRTAY DVTLAPIRIS EARYMPVALA PSATVLPSNA TGVISITFES LAAQLDLGAL KLPTLRAHLH GEQSFVAALT DCLFVNVLGA YVEPERNGRW TALRKLPIAH AGFDEDDALI DYPAKSHPAY RLLTEYFAFP DKFDFVDFDV AAIARAAGRC QRATLHLVLQ DVRSDSHVAR LLELLTASHF RLFCTPIVNL FRQHGEPIRI THRAVSYPVI AEARRAFAYE VYSIDSVKLV RQQAHEESVI EFRPFYSLHH GESARIGHYW FARRNDWVAQ KSPGYETEIS IVDIDFEPTS PQTDTLSLDL TCTNRDLPSM LAFGLEGGDL FQEGGAQTSG ISLLRRPTQS VRFERGRAAH WRLVSHLALN HVSLVAHGLA PLKEMLTLYD LRRTAVSMRQ IDGLVGVEQR GAVQWLPGKP FATFVRGIEI RLTIDEEHFV GASLASFVRV LDSFFGLYVH LNSFVQLVVV SKRTGEEIIR CKPRTGESIL A
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