Gene BamMC406_0403 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0403 
Symbol 
ID6178478 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp450983 
End bp452473 
Gene Length1491 bp 
Protein Length496 aa 
Translation table11 
GC content63% 
IMG OID641680145 
ProductEvpB family type VI secretion protein 
Protein accessionYP_001807116 
Protein GI172059464 
COG category[S] Function unknown 
COG ID[COG3517] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR03355] type VI secretion protein, EvpB/VC_A0108 family 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.70497e-06 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCAGC AAACGGCTGC GGCCCAAGCG AGCGGCGCGG AATACGCCGC CGGGACTTCG 
TTGCTCGACG ACATCGTCGA GAAGAGCAAG GTCGCGAAAT CCGATTCCGA GCATGCGCGT
GCGAAGGACC TGATCGGCGA ACTCGTGCAC CAGGTGCTCG ACGGTACTGT GATCGTGTCG
GACAACCTGT CGGCGACGAT CGACGCGCGC GTCGCGGAGC TCGACCGCCT GATCTCCACG
CAGCTCTCCG CGGTGATGCA TGCGCCGGAA TTCCAGCGCC TGGAAAGCAC GTGGCGCGGG
ATGGACTACC TGGTCAAGGA AAGCAACACG GGCCAGACGA TCAAGATCAA GGCGCTGCAC
GCCCCGAAGC GCGACCTCGT GCGCGACTTC AAGGGCGCGA GCGAGTTCGA CCAGAGCGCG
CTGTTCAAGA AGGTCTACGA AGAAGAGTTC GGCACGTTCG GCGGCTCGCC GTTCGGTGCG
CTGATCGGCG ACTACGAGAT CTCGCGCCAG CCGGAAGACA TGTACTTCAT CGAGCAGATG
TCGCACGTCG CGGCGGCCGC GCATGCGCCG TTCATCGCGT CGGCGTCGCC GGAGCTGCTC
GGCCTCGAGT CGTTCTCCGA CCTCGGCAAG CCGCGCGATC TCGGCAAGGT GTTCGACACG
GTCGAATACG CGAAGTGGAA GTCGTTCCGC GATTCCGAGG ATTCGCGCTA CGTCGGCCTC
ACGCTGCCGC GCTTCCTCGG CCGCCTGCCG TTCAATCCGA AGGACGGCCA GACCGCGGAG
AACTTCAACT TCGTCGAGGA TGTGGACGGC ACCGAGCACG ACAAGTACCT GTGGTGCAAC
GCGGCGTGGG CGTTCGCGGC ACGCCTGACC GCCGCGTTCG ACGACTTCGG CTGGTGCGCG
GCGATCCGCG GCGTCGAAGG CGGTGGCCTC GTCGAGGATC TGCCGACCCA CACGTTCAAG
ACCGACGACG GTGAAGTCGC GCTGAAGTGC CCGACCGAAA TCGCGATCAC CGATCGCCGC
GAGAAGGAGC TGAGCGACCT CGGCTTCATC CCGCTCGTTC ATTGCAAGAA CTCGGATTAC
GCTGCGTTCT TCGCCGCGCA ATCGGTGCAG AAACCGAAAA AATACAGCAC CGACAGCGCG
AATGCGAATG CCGTCCTGTC CGCCCAGCTT CAGTACATCT TCTCGGTATC GCGCGTCGCG
CACTACCTGA AGGCGATGAT GCGGGACAAG ATCGGCAGCT TCGCATCGGC GCAGAACGTG
GAGACTTTCC TCAACCGGTG GATTTCGCAG TACGTCCTGC TCGACGACAA CGCATCGCAG
GAACAGAAGG CGCAATTCCC GCTGCGCGAG GCATCCATAC AAGTGTCAGA GATTCCGGGG
AAGCCGGGCT CGTATCGTTC GGTCGCGTTC CTGCGCCCGC ACTTTCAGCT CGACGAACTC
TCGATTTCTC TGCGACTTGT CGCTGATCTG CCCAAACCGG CAAATTCATA A
 
Protein sequence
MNQQTAAAQA SGAEYAAGTS LLDDIVEKSK VAKSDSEHAR AKDLIGELVH QVLDGTVIVS 
DNLSATIDAR VAELDRLIST QLSAVMHAPE FQRLESTWRG MDYLVKESNT GQTIKIKALH
APKRDLVRDF KGASEFDQSA LFKKVYEEEF GTFGGSPFGA LIGDYEISRQ PEDMYFIEQM
SHVAAAAHAP FIASASPELL GLESFSDLGK PRDLGKVFDT VEYAKWKSFR DSEDSRYVGL
TLPRFLGRLP FNPKDGQTAE NFNFVEDVDG TEHDKYLWCN AAWAFAARLT AAFDDFGWCA
AIRGVEGGGL VEDLPTHTFK TDDGEVALKC PTEIAITDRR EKELSDLGFI PLVHCKNSDY
AAFFAAQSVQ KPKKYSTDSA NANAVLSAQL QYIFSVSRVA HYLKAMMRDK IGSFASAQNV
ETFLNRWISQ YVLLDDNASQ EQKAQFPLRE ASIQVSEIPG KPGSYRSVAF LRPHFQLDEL
SISLRLVADL PKPANS