Gene BamMC406_0276 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0276 
SymbolrplC 
ID6177775 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp327957 
End bp328607 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content62% 
IMG OID641680021 
Product50S ribosomal protein L3 
Protein accessionYP_001806993 
Protein GI172059341 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0087] Ribosomal protein L3 
TIGRFAM ID[TIGR03625] 50S ribosomal protein L3, bacterial 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value7.62346e-07 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.121842 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCCTTG GACTCGTAGG TCGCAAGGTT GGCATGACCC GTATCTTCAC GGCTGAAGGG 
GATTCGATTC CCGTCACCGT GCTGGACGTG TCGGACAACC GCGTGACGCA GATCAAGACT
GTTGAAACCG ACGGCTACAC GGCCGTGCAG GTTGCATTCG GCTCCCGCCG CGCATCGCGC
GTGACGAAGC CGCTGGCAGG TCATCTCGCC AAAGCCGGTG TCGAAGCCGG TGAAATCCTC
AAGGAATTCC GCATTGACGC GGCCAAGGCA GCCGAGCTGT CGAATGGCGC CGTCGTCGGT
GCCGATCTTT TCGAAGTAGG CCAGAAGGTC GACGTGCAAG GCGTGTCGAT CGGTAAGGGC
TACGCCGGTA CGATCAAGCG TTACAACTTC TCCTCCGGCC GTGCCACGCA CGGTAACTCG
CGCTCGCACA ACGTGCCGGG CTCGATCGGT ATGGCGCAGG ATCCGGGTCG CGTTTTCCCG
GGTAAGCGCA TGACGGGTCA CCTCGGTGAC GTTACGGTGA CGGTGCAGAA CCTCGAAATC
GCTCGTATCG ACGCAGAGCG CAAGCTGCTG CTCGTCAAGG GCGCGATTCC GGGCGCGAAG
GGCGGCAAGG TTTTCGTGAC GCCGGCCGTC AAGACCAAGG GGGCGAAATA A
 
Protein sequence
MSLGLVGRKV GMTRIFTAEG DSIPVTVLDV SDNRVTQIKT VETDGYTAVQ VAFGSRRASR 
VTKPLAGHLA KAGVEAGEIL KEFRIDAAKA AELSNGAVVG ADLFEVGQKV DVQGVSIGKG
YAGTIKRYNF SSGRATHGNS RSHNVPGSIG MAQDPGRVFP GKRMTGHLGD VTVTVQNLEI
ARIDAERKLL LVKGAIPGAK GGKVFVTPAV KTKGAK