| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0268 |
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| Symbol | rpoB |
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| ID | 6177653 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 312016 |
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| End bp | 316122 |
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| Gene Length | 4107 bp |
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| Protein Length | 1368 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 641680013 |
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| Product | DNA-directed RNA polymerase subunit beta |
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| Protein accession | YP_001806985 |
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| Protein GI | 172059333 |
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| COG category | [K] Transcription |
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| COG ID | [COG0085] DNA-directed RNA polymerase, beta subunit/140 kD subunit |
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| TIGRFAM ID | [TIGR02013] DNA-directed RNA polymerase, beta subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.716165 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATATT CCTTCACCGA GAAGAAGCGC ATTCGCAAGA GTTTCGCGAA GCGCCCCATC
GTTCACCAAG TTCCGTTCTT GCTGGCCACC CAGCTTGAAT CATTCAGCAC GTTTCTGCAA
GCCGATGTGC CGGGCACGCA ACGCAAGCCT GAAGGTTTGC AGGCCGCCTT CACATCGGTA
TTTCCCATTG TTTCGCACAA CGGTTTCGCG CGCCTCGAGT TCGTGAGCTA TGCGCTGTCC
TCGCCGGCAT TCAACATCAA GGAATGCCAG CAGCGGGGCC TGACGTACTG CTCCGCGCTG
CGCGCGAAGG TCCGCCTCGT CATCCTCGAC AAGGAATCGC CGAACAAGCC GGTCGTCAAG
GAAGTGAAGG AGCAGGAAGT GTACATGGGC GAAATTCCGC TCATGACGCC GACGGGCTCG
TTCGTCATCA ACGGCACCGA GCGTGTCATC GTCTCGCAGC TGCACCGTTC GCCGGGCGTG
TTCTTCGAAC ACGACAAGGG CAAGACGCAC AGCTCGGGCA AGCTGCTGTT CTCGGCACGG
ATCATTCCGT ACCGCGGCTC GTGGCTCGAC TTCGAATTCG ATCCGAAGGA CATCCTGTAC
TTCCGCGTCG ACCGTCGCCG CAAGATGCCG GTCACGATCC TGCTGAAGGC CATCGGCCTC
ACGCCGGAAC AGATCCTCGC GAACTTCTTC GTGTTCGACA ACTTCACGCT GATGGACGAA
GGCGCGCAAC TCGAGTTCGT GCCCGAGCGC CTGCGTGGTG AAGTCGCGCG CTTCGACATC
ACGGATCGCG ACGGCAAGGT CATCGTCCAG AAGGACAAGC GGATCAACGC GAAGCACATT
CGCGACCTCG AAGCCGCGAA GACCAAGTTC ATCTCGGTGC CGGAAGACTA TCTGCTCGGC
CGCGTGCTGG CGAAGAACGT CGTCGACGGC GACACCGGCG AAGTGATCGC GAGCGCGAAC
GACGAAGTCA CGGAAAGCGT GCTCGAGAAG CTGCGCGAAG CGGGCATCAA GGAAATCCAG
ACGCTCTACA CGAACGATCT GGACCAGGGT CCGTACATCT CGTCGACGCT GCGTGTCGAC
GAAACGACCG ACAAGACGGC CGCACGCATT GCGATCTACC GCATGATGCG TCCGGGCGAG
CCGCCGACCG AAGAAGCGGT CGAGGCGCTG TTCAACCGTC TGTTCTACAG CGAAGAAGCG
TACGACCTGT CGAAGGTCGG CCGCATGAAG TTCAACCGCC GCGTCGGCCG TGACGAGATC
ACCGGCCCGA TGACGCTGCA GGACGACGAC ATCCTCGCGA CGATCAAGAT CCTCGTCGAA
CTGCGCAACG GCAAGGGCGA AGTGGACGAC ATCGACCACC TCGGCAACCG CCGCGTGCGT
TGTGTCGGCG AACTGGCGGA AAACCAGTTC CGCGCGGGTC TCGTGCGTGT CGAGCGCGCG
GTCAAGGAAC GCCTCGGCCA GGCCGAAAGC GAAAACCTGA TGCCGCACGA CCTGATCAAC
TCGAAGCCGA TTTCGTCGGC GATCCGCGAG TTCTTCGGTT CGTCGCAGCT GTCGCAGTTC
ATGGACCAGA CCAACCCGCT GTCGGAAATC ACGCACAAGC GCCGTGTTTC CGCACTGGGC
CCGGGCGGTC TGACGCGCGA ACGCGCAGGC TTCGAAGTTC GTGACGTGCA CCCGACCCAC
TATGGCCGCG TGTGCCCGAT CGAAACGCCG GAAGGTCCGA ACATCGGCCT GATCAACTCG
CTCGCACTGT ACGCGCACCT GAACGAGTAC GGCTTCCTCG AGACGCCGTA CCGCAAGGTC
GTGGACAGCA AGGTGACCGA CCAGATCGAC TACCTGTCGG CGATCGAGGA AGGCCGCTAC
ATGATCGCCC AGGCGAACGC CGCGATCGAC GAGAACGGCC AGCTGGTCGA CGAACTCGTG
TCGTCGCGTG AAGCCGGCGA AACGATGATG GTCACGCCGG ACCGTATCCA GTACATGGAC
GTCGCGCCGT CGCAGATCGT GTCGGTTGCA GCCTCGCTGA TCCCGTTCCT CGAGCACGAC
GATGCGAACC GTGCACTGAT GGGCTCGAAC ATGCAGCGTC AGGCCGTGCC GTGTCTGCGT
CCGGAGAAGC CGGTCGTCGG TACGGGCATC GAGCGCACCT GCGCGGTCGA CTCGGGCACG
ACGGTTCAGG CGTTCCGCGG CGGCGTCGTC GACTATGTCG ACGCAGGCCG TATCGTGATT
CGCGTGAACG ACGACGAAGC CGTCGCGGGT GAAGTCGGTG TCGACATCTA CAACCTGATC
AAGTACACGC GTTCGAACCA GAACACGAAC ATCAACCAGC GTCCGATCGT GAAGATGGGC
GACAAGGTCT CGCGCGGCGA CGTGCTGGCC GACGGCGCCT CGACGGACCT GGGCGAGCTC
GCGCTCGGCC AGAACATGCT GATCGCGTTC ATGCCGTGGA ACGGCTACAA CTTCGAGGAT
TCGATCCTGA TCTCGGAAAA GGTGGTCGCC GACGATCGCT ACACGTCGAT CCACATCGAA
GAGCTGAACG TCGTTGCACG CGACACGAAG CTCGGGCCGG AAGAAATCAC GCGCGACATC
TCGAACCTGG CGGAAGTCCA GCTCGGCCGT CTCGACGAAT CGGGCATCGT ATACATCGGT
GCGGAAGTCG AAGCGGGCGA CGTGCTGGTC GGCAAGGTCA CGCCGAAGGG CGAGACCCAG
CTGACGCCGG AAGAGAAGCT GCTGCGCGCG ATCTTCGGCG AGAAGGCATC GGACGTGAAG
GACACGTCGC TGCGCGTGCC GTCGGGCATG AGCGGCACCG TGATCGACGT CCAGGTGTTC
ACGCGTGAAG GCATCCAGCG CGACAAGCGT GCGCAACAGA TCATCGACGA CGAACTGAAG
CGCTACCGTC TCGACCTGAA CGACCAGCTG CGCATCGTGG AAGGCGACGC GTTCCAGCGT
CTCGCGCGCA TGCTCGTGGG CAAGGTCGCG AACGGCGGTC CGAAGAAGCT CGCGAAGGGC
ACGAAGATCG ACCAGGCTTA CCTGGAAGAC CTCGACCACT ACCACTGGTT CGACATCCGC
CTCGCGGACG ACGAAGCAGC GGCGCAGCTC GAAGCGATCA AGAACTCGAT CGAGGAAAAG
CGTCACCAGT TCGACCTCGC GTTCGAAGAG AAGCGCAAGA AGCTCACGCA AGGCGACGAA
CTGCCGCCGG GCGTGCTGAA GATGGTCAAG GTGTACCTCG CGGTGAAGCG TCGTCTGCAG
CCTGGCGACA AGATGGCAGG CCGTCACGGT AACAAGGGTG TCGTGTCGAA GATCGTCCCG
ATCGAAGACA TGCCGTACAT GGCCGACGGC CGTCCGGCCG ACGTCGTGCT GAACCCGCTC
GGCGTGCCGT CGCGGATGAA CGTGGGTCAG GTTCTGGAAG TGCACCTCGG CTGGGCCGCG
AAGGGCCTCG GCTGGCGTAT CGGCGAAATG CTGCAGCGTC AGGCGAAGAT CGAGGAAATG
CGCGCATTCC TGACGAAGAT CTACAACGAC TCGGGCCGCA AGGAAGATCT GGAAAGCTTC
ACCGACGACG AGATCCTCGA ACTCGCGAAG AACCTGCGCG AAGGCGTGCC GTTCGCGACG
CCGGTGTTCG ACGGTGCGAC CGAGGAAGAA ATGGGCAAGA TGCTCGACCT CGCGTTCCCG
GACGACATCG CCGAGCAGCT CGGCATGAAC CCGTCGAAGA ACCAGGTCCG TCTGTACGAC
GGCCGCACGG GTGAAATGTT CGAACGTCGC GTGACGCTTG GCTACATGCA CTACCTGAAG
CTGCACCACT TGGTCGACGA CAAGATGCAC GCGCGTTCGA CGGGCCCGTA CTCGCTCGTC
ACGCAGCAGC CGCTGGGTGG TAAGGCGCAG TTCGGTGGCC AGCGTTTCGG TGAAATGGAA
GTGTGGGCAC TCGAAGCGTA CGGCGCGTCC TACGTGCTGC AGGAAATGCT GACGGTGAAG
TCGGACGACG TGAACGGCCG GACCAAGGTC TATGAGAACC TGGTCAAGGG CGATCATGTC
ATCGATGCAG GCATGCCGGA ATCCTTCAAC GTGCTCGTGA AGGAAATCCG CTCGCTCGGT
ATCGATATCG ATCTCGACCG CAATTAA
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| Protein sequence | MQYSFTEKKR IRKSFAKRPI VHQVPFLLAT QLESFSTFLQ ADVPGTQRKP EGLQAAFTSV
FPIVSHNGFA RLEFVSYALS SPAFNIKECQ QRGLTYCSAL RAKVRLVILD KESPNKPVVK
EVKEQEVYMG EIPLMTPTGS FVINGTERVI VSQLHRSPGV FFEHDKGKTH SSGKLLFSAR
IIPYRGSWLD FEFDPKDILY FRVDRRRKMP VTILLKAIGL TPEQILANFF VFDNFTLMDE
GAQLEFVPER LRGEVARFDI TDRDGKVIVQ KDKRINAKHI RDLEAAKTKF ISVPEDYLLG
RVLAKNVVDG DTGEVIASAN DEVTESVLEK LREAGIKEIQ TLYTNDLDQG PYISSTLRVD
ETTDKTAARI AIYRMMRPGE PPTEEAVEAL FNRLFYSEEA YDLSKVGRMK FNRRVGRDEI
TGPMTLQDDD ILATIKILVE LRNGKGEVDD IDHLGNRRVR CVGELAENQF RAGLVRVERA
VKERLGQAES ENLMPHDLIN SKPISSAIRE FFGSSQLSQF MDQTNPLSEI THKRRVSALG
PGGLTRERAG FEVRDVHPTH YGRVCPIETP EGPNIGLINS LALYAHLNEY GFLETPYRKV
VDSKVTDQID YLSAIEEGRY MIAQANAAID ENGQLVDELV SSREAGETMM VTPDRIQYMD
VAPSQIVSVA ASLIPFLEHD DANRALMGSN MQRQAVPCLR PEKPVVGTGI ERTCAVDSGT
TVQAFRGGVV DYVDAGRIVI RVNDDEAVAG EVGVDIYNLI KYTRSNQNTN INQRPIVKMG
DKVSRGDVLA DGASTDLGEL ALGQNMLIAF MPWNGYNFED SILISEKVVA DDRYTSIHIE
ELNVVARDTK LGPEEITRDI SNLAEVQLGR LDESGIVYIG AEVEAGDVLV GKVTPKGETQ
LTPEEKLLRA IFGEKASDVK DTSLRVPSGM SGTVIDVQVF TREGIQRDKR AQQIIDDELK
RYRLDLNDQL RIVEGDAFQR LARMLVGKVA NGGPKKLAKG TKIDQAYLED LDHYHWFDIR
LADDEAAAQL EAIKNSIEEK RHQFDLAFEE KRKKLTQGDE LPPGVLKMVK VYLAVKRRLQ
PGDKMAGRHG NKGVVSKIVP IEDMPYMADG RPADVVLNPL GVPSRMNVGQ VLEVHLGWAA
KGLGWRIGEM LQRQAKIEEM RAFLTKIYND SGRKEDLESF TDDEILELAK NLREGVPFAT
PVFDGATEEE MGKMLDLAFP DDIAEQLGMN PSKNQVRLYD GRTGEMFERR VTLGYMHYLK
LHHLVDDKMH ARSTGPYSLV TQQPLGGKAQ FGGQRFGEME VWALEAYGAS YVLQEMLTVK
SDDVNGRTKV YENLVKGDHV IDAGMPESFN VLVKEIRSLG IDIDLDRN
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