Gene BamMC406_0248 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0248 
Symbol 
ID6177695 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand- 
Start bp287952 
End bp289049 
Gene Length1098 bp 
Protein Length365 aa 
Translation table11 
GC content63% 
IMG OID641679984 
Product4-hydroxyphenylpyruvate dioxygenase 
Protein accessionYP_001806965 
Protein GI172059313 
COG category[E] Amino acid transport and metabolism
[R] General function prediction only 
COG ID[COG3185] 4-hydroxyphenylpyruvate dioxygenase and related hemolysins 
TIGRFAM ID[TIGR01263] 4-hydroxyphenylpyruvate dioxygenase 


Plasmid Coverage information

Num covering plasmid clones28 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.000564922 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCAGATCC CCAACTGGGA GAATCCCGTC GGCACCGACG GCTTCGAATT CATCGAATAC 
ACCGCACCGG ATCCGAAAGC GCTCGGACAG CTGTTCGAGC GGATGGGTTT CACCGCGATC 
GCACGCCATC GCCACAAGGA CGTGACGGTC TACCGCCAGG GCGACATCAA CTTCATCATC 
AACGCCGAAC CCGATTCGTT CGCACAACGC TTCGCGCGCC TGCACGGCCC GTCGATCTGC 
GCGATCGCGT TCCGCGTGCA GGACGCCGCG AAGGCGTACA AGCACGCGCT CGACCTCGGC 
GCGTGGGGCT TCGACAACAA GACCGGCCCG ATGGAGCTGA ACATCCCGGC GATCAAGGGC 
ATCGGCGATT CGCTGATCTA TTTCGTCGAC CGCTGGCGCG GCAAGAACGG CGCGCAGCCG 
GGTGCGATCG GCGACATCAG CATCTATGAC GTCGACTTCG AGCCGATCGC CGGCGCGAAC 
CCGAACCCGG TGGGCCACGG CCTCACCTAT ATCGACCACC TGACGCACAA CGTGCATCGC 
GGCCGCATGC AGGAATGGGC CGAGTTCTAC GAGCGCCTGT TCAACTTCCG CGAAGTGCGC 
TACTTCGACA TCGAAGGCAA GGTCACGGGC GTGAAGTCGA AGGCGATGAC GTCGCCGTGC 
GGCAAGATCC GGATCCCGAT CAACGAGGAA GGCTCGGACA CGGCCGGCCA GATCCAGGAG 
TACCTCGACG CGTACCACGG CGAAGGCATC CAGCACATCG CGCTCGGCAC GAACGACATC 
TACGGCGCGG TCGATGGCCT GCGCGGCAAG GAAGTGAAGC TGCTCGACAC GATCGACACC 
TATTACGAGC TGGTCGACCG CCGCGTGCCG AACCACGGCG AATCGCTCGA CGAGCTGAAG 
AAGCGCAAGA TCCTGATCGA CGGCGCCCGC GACGACCTGC TGCTGCAGAT CTTCACCGAG 
AACCAGATCG GCCCGATCTT CTTCGAGATC ATCCAGCGCA AGGGCAACCA GGGCTTCGGC 
GAAGGCAACT TCAAGGCGCT GTTCGAATCG ATCGAGCTCG ACCAGATCCG CCGCGGCGTG 
GTCCAGGACA AGGCCTGA
 
Protein sequence
MQIPNWENPV GTDGFEFIEY TAPDPKALGQ LFERMGFTAI ARHRHKDVTV YRQGDINFII 
NAEPDSFAQR FARLHGPSIC AIAFRVQDAA KAYKHALDLG AWGFDNKTGP MELNIPAIKG 
IGDSLIYFVD RWRGKNGAQP GAIGDISIYD VDFEPIAGAN PNPVGHGLTY IDHLTHNVHR 
GRMQEWAEFY ERLFNFREVR YFDIEGKVTG VKSKAMTSPC GKIRIPINEE GSDTAGQIQE 
YLDAYHGEGI QHIALGTNDI YGAVDGLRGK EVKLLDTIDT YYELVDRRVP NHGESLDELK 
KRKILIDGAR DDLLLQIFTE NQIGPIFFEI IQRKGNQGFG EGNFKALFES IELDQIRRGV 
VQDKA