| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0218 |
|---|
| Symbol | |
|---|
| ID | 6178325 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | + |
|---|
| Start bp | 253475 |
|---|
| End bp | 254272 |
|---|
| Gene Length | 798 bp |
|---|
| Protein Length | 265 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641679953 |
|---|
| Product | transport-associated |
|---|
| Protein accession | YP_001806935 |
|---|
| Protein GI | 172059283 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG2823] Predicted periplasmic or secreted lipoprotein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.011843 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATCAAA GCCGCGTCAA ACAGACGCTC GTCAGAACCA CGTTGCTCGC CGCGCTGACG
GCGGGCCTCG CGATGTCGCT GCAGGGCTGC GTGCTCGGCG TGCTGGGTGC GGCGGCCGGC
GGCGGCGCGC TGATCGCGAC CGATCGCCGT ACGCTCGGCG CGCAGACCGA GGATCGCGAG
ATCCAGGTCA AGTCGCTCAC GCAAATCAAC AACGGGCTGC CGGACCAGTC GCACGTAAAC
GTCACGGTGT TCAACCGCCG CGTGCTGCTG ACGGGTGAAG TGCCGAACGA CGCATCGAAG
CAGCGCGCCG AGGAAATCGT GCGCGGCATC AACAACGTGA GCGCGATCGT CAACGAGCTG
TCGGTCGAGC CGGCATCGTC GCTGTCGTCG CGCGCGAACG ACTCGTACCT CGAAGGGCGC
GTGAAGTCCG AGCTGATCGC GACGAAGGGG CTGTCGGCGA ACTATTACAA GGTCGTCAGC
GAGCGCGGCA ACATCTACCT GCTGGGTCTC GTGACGGTCG ACGAAGGCAA TCGCGGAGCG
GATGCGGCGA GCCAGGTGCC GGGCGTCGAG AAGGTCGTGA AGGTGTTCCA GTACATCAAG
CCGCAGGACG CGCAGGCGTT GCAGGCTGCG TCGCCGAGCA CTGCGTCCGG CGCGCAGGCC
GCCGCCGCGC CCGCGGATGC AGCGACGGTC GGTGCGGTGC CCGATGCATC GGTGCAGTCC
GCTCCGCTGC AACCGCCCGC GCCGATCTCG AATTCGTCGA GCGTGCATCC GGGCAACCCG
AAGGCAACGC CGCAATGA
|
|---|
| Protein sequence | MNQSRVKQTL VRTTLLAALT AGLAMSLQGC VLGVLGAAAG GGALIATDRR TLGAQTEDRE
IQVKSLTQIN NGLPDQSHVN VTVFNRRVLL TGEVPNDASK QRAEEIVRGI NNVSAIVNEL
SVEPASSLSS RANDSYLEGR VKSELIATKG LSANYYKVVS ERGNIYLLGL VTVDEGNRGA
DAASQVPGVE KVVKVFQYIK PQDAQALQAA SPSTASGAQA AAAPADAATV GAVPDASVQS
APLQPPAPIS NSSSVHPGNP KATPQ
|
|---|
| |