Gene BamMC406_0198 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0198 
SymbolfliA 
ID6178583 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp234636 
End bp235370 
Gene Length735 bp 
Protein Length244 aa 
Translation table11 
GC content68% 
IMG OID641679933 
Productflagellar biosynthesis sigma factor 
Protein accessionYP_001806915 
Protein GI172059263 
COG category[K] Transcription 
COG ID[COG1191] DNA-directed RNA polymerase specialized sigma subunit 
TIGRFAM ID[TIGR02479] RNA polymerase sigma factor, FliA/WhiG family
[TIGR02937] RNA polymerase sigma factor, sigma-70 family 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.410275 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGTACA ACGCTCAAGG CAAGATGACC CAGGCCGACG TGCTCGCGCA ATATGCGCCG 
CTCGTGCGGC GCCTGGGCCT GCAGCTCGTC GCGAAGATGC CGGCGAGCGT CGACCTCGAC
GACCTGATCC AGGCCGGCAT GATCGGGCTG ATGGATGCGG CCGGCCGCTA CAAGGAAGAC
CAGGGCGCGC AGTTCGAGAC CTACGCGACG CAGCGCATCC GCGGCGCGAT GCTCGACGAG
CTGCGCAGCA ACGACTGGCT GCCGCGCAGC CTGCGCAAGA CGTCGCGCGA GGTCGAGTAC
GCGGTGCACC AGGTCGAGCA GCAGCTCGGC CGCTCGGCGA GCGAGACCGA GATCGCGGAG
CACCTGAAGA TGCCGCTCGA CGAATACCAG GGGATGCTGC AGGACCTGCA CGGCAGCCAG
CTCATCTACT ACGAGGATTT CGATCGCGCG GCCGACGACG AGCCGTTCCT CGACCGCTAT
CGCGTCGATC ACGCCGATCC GTTGTCGGCG CTGCTCGACG ACCACCTGCG CGAGGCGCTC
GTCGACGCGA TCGACCGGCT GCCCGAGCGC GAGAAGCTGC TGATGTCGCT GTACTACGAG
CGCGGGCTGA ACCTGCGCGA GATCGGCGCG GTGCTCGAAG TGAGCGAGTC GCGCGTGTGC
CAGCTGCACA GTCAGGCCGT CGCGCGCCTG CGCGCGCGGT TGCGCGAACA GGCGTGGGTC
GGCGCGGAGA ATTGA
 
Protein sequence
MMYNAQGKMT QADVLAQYAP LVRRLGLQLV AKMPASVDLD DLIQAGMIGL MDAAGRYKED 
QGAQFETYAT QRIRGAMLDE LRSNDWLPRS LRKTSREVEY AVHQVEQQLG RSASETEIAE
HLKMPLDEYQ GMLQDLHGSQ LIYYEDFDRA ADDEPFLDRY RVDHADPLSA LLDDHLREAL
VDAIDRLPER EKLLMSLYYE RGLNLREIGA VLEVSESRVC QLHSQAVARL RARLREQAWV
GAEN