Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BamMC406_0165 |
Symbol | |
ID | 6176172 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia ambifaria MC40-6 |
Kingdom | Bacteria |
Replicon accession | NC_010551 |
Strand | + |
Start bp | 197828 |
End bp | 200314 |
Gene Length | 2487 bp |
Protein Length | 828 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 641679900 |
Product | TPR repeat-containing protein |
Protein accession | YP_001806882 |
Protein GI | 172059230 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [COG5010] Flp pilus assembly protein TadD, contains TPR repeats |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.0585605 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGATA TCCAGCAGGC CCTGCAGGAG GCACTTGCCC ACCACCAGGC CGGGCGTTTC GCGCAAGCGA AGACGCTGTA CGACGCGATC CTGCACGCCC AGCCCGGGCA GCCCGATGCA ATGCACTTCC TCGGGCTGCT CGCGTGCCAG CTGAAGCAGT ACGACGCCGG CCTCGCGTTG ATGGAGCGCT CGCTCGCCGA GCGACCGGAC GCGTCGTACT TCAACAACCT CGGCAACATG CTGCGCGAAT GCGGGCGGCT CGACGACGCG ATCGCGCACT ACCGTCGCGC GGTGGCGCTG CGTCCGGACT ATCCGGAAGC GCACAACAAC CTCGGCAACG CGCTGCGCGA CGCGCGCGAT CCGGCCGAGG CGATGCAGAG CTGTTCGCGC GCGATCGAAC TGCGCCCCGG CTATGCGGAG GCCTACAACA ACCTCGGCAA CGTGTTGCAG GACCTGGGCG AGCTGGATGC GGCCGCGGCA AGCTACGGCA AGGCGATCTC GTTCCATCCC GCGTATGCGG AAGCGCACAG CAACCTCGGC AACGTGCTGC GCGCACAGGA GCGGCACGCG GACGCGATCG TGCACTACCG TCGCGCGATC GAACTGAACC CTGCGCTGCG CGTCGCGCAT CGCGGGCTCG CCATTGCGCT GCGGGCCACC GACGATTTCG ACGGCGCGCT CGAGCATGCG CGCGCGGGGC TCGAACCGGA CGATGCGGAA GGCCATTGCA CGCTCGGGCG GTCGCTGCGC AGCATGAACG ACTTCGACGG CGCGGCGCGC TTGTTCGAGC GCGCGTGCGA GATCGATCCC GGCTACGCGC CGGCATGGTG CCGGCTCGGC GAGCTGCGTT GCCAGCAGGG CGAATACGAG GAATCCCTGC GCCTGTGCCG GCACGCGATC GAACTCGATC CCGAACTCGC GGATGCGTAC AACTTCCTCG GTCTCGCGTA TCACAACCTC GACCGCATGG CGGCGTCGGA GCTGAGCCAT CGCCACGCGA TCGACCTGAA TCCGGACGAC GCGGATGCGC ACCACAATCT CGCGGCCGCG CTGTTCCGTC TCGACAAGCT CGACGAGGCG ATGAGCGAAT ACCGGATCGC GCAGGAACTC GGCGTCGATC CGGTGAAGAT CCAGCTGACG CTCGGCGACA TCCTGTGGGC CAAGCGCGAT TTCGCCGGTG CGGTCGCGGC CTTCCGCGAA GCAGTCGAAC ACGATCCGCA CCGCGCTTAC GCCCGGCTGC TGTTCAACAT GTCGAGCTCG CCGGCGTTCG CGCCGGAGGA GTGGGTCGTC GATGCGCAGC GCTACGGAGA TTACCTCGCG CGCGACGCGC GGCTGCTGTC GCATGACCGC GAGCAGCGTG CGCGGCAGGC GCGCGGCCGG CCGTTGCGCG TCGGCTTCGT GTCCGGTGAC CTGCGTCAGC ATCCGGTCGG GATCTTCCTC GAAAGCGTGC TCGCGCATCT CGATCGCACG CGCATCGAGC CGCATGCGTA CGTGACCTTC GTGGTGGAGG ACGACGTGAC CGCGCGGCTG AAGTCGGGCT TCGCGAGCTG GAAGAAGCTC ACGTGCCTGA ATCGCGACCA GGCCGCGCGA ATGATCCACG ACGACGGCAT CGACGTGCTC GTCGATCTGG CCGGCCACAC CAACTGGAGC GGGCTGCCCG TGTTCGCGCA CCGGCCCGCG CCCGTGCAGG CGAGCTGGCT CGGCTTCTTC GCGACGACCG GCTGCCGCGC GATCGACTAC TTCATCGGCG ACCCGCATAC GCTGCCGGCC GACGAGGCGC ATCACTTCGT CGAGCAACCG TGGCATTTGC CGGACAGCTA CCTGTGCTTC ACGCCGCCGG CTTACGACGT CGCGGTCGGC CCGCTGCCGA TGGCCACGAA CGGTGGCGTG ACGTTCGGCT GCTTCGGCAA GCTCACGAAG ATCAGCGACG ACGTGATCGC GCTGTGGTCG CGCCTGCTGC ACGCGCTGCC CGATGCGCGG CTGATGCTGA AGGCGCACGA GCTCGGCGCG AGCGACCTGA ACCGCGCGAC GCTCGAGCGC TTCGCGCGGC ACGGCATCGG CTCGCACCAG CTGATCCTCG AAGGCGGTTC GCCGCGCGCG GAGTATTTCA ACGCGTACAA CCGGATCGAC ATCGCGCTGA GCCCGTTCCC GTATCCGGGC GGCACGACGA CGGCCGAAGC GCTGTGGATG GGCGTGCCGG TGATCGGGAT GAAGGGCGGC CGCTTCGTCA CGCATATCTG CGAAAGCCTG CTGCATGCGG CCGGGATGGG CGACTGGATC GCCGCCGACG AGGACGCGTA TCTCGCGAAG GCGATCGCGT TCGCGCGCGA TCGCGACGCG CTGGCGGCGT TGCGCGCGAC GCTGCGCGAA CGCACGCTCG CGTCGCCGCT GTGCGATGCG GCGCGTTTCG CCCGCAATCT CGAGGATGCG TTCCACGGGA TGTGGGCGCG CTACGTGGCC GGCGACACGG ACGGCACCCG CACATGA
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Protein sequence | MNDIQQALQE ALAHHQAGRF AQAKTLYDAI LHAQPGQPDA MHFLGLLACQ LKQYDAGLAL MERSLAERPD ASYFNNLGNM LRECGRLDDA IAHYRRAVAL RPDYPEAHNN LGNALRDARD PAEAMQSCSR AIELRPGYAE AYNNLGNVLQ DLGELDAAAA SYGKAISFHP AYAEAHSNLG NVLRAQERHA DAIVHYRRAI ELNPALRVAH RGLAIALRAT DDFDGALEHA RAGLEPDDAE GHCTLGRSLR SMNDFDGAAR LFERACEIDP GYAPAWCRLG ELRCQQGEYE ESLRLCRHAI ELDPELADAY NFLGLAYHNL DRMAASELSH RHAIDLNPDD ADAHHNLAAA LFRLDKLDEA MSEYRIAQEL GVDPVKIQLT LGDILWAKRD FAGAVAAFRE AVEHDPHRAY ARLLFNMSSS PAFAPEEWVV DAQRYGDYLA RDARLLSHDR EQRARQARGR PLRVGFVSGD LRQHPVGIFL ESVLAHLDRT RIEPHAYVTF VVEDDVTARL KSGFASWKKL TCLNRDQAAR MIHDDGIDVL VDLAGHTNWS GLPVFAHRPA PVQASWLGFF ATTGCRAIDY FIGDPHTLPA DEAHHFVEQP WHLPDSYLCF TPPAYDVAVG PLPMATNGGV TFGCFGKLTK ISDDVIALWS RLLHALPDAR LMLKAHELGA SDLNRATLER FARHGIGSHQ LILEGGSPRA EYFNAYNRID IALSPFPYPG GTTTAEALWM GVPVIGMKGG RFVTHICESL LHAAGMGDWI AADEDAYLAK AIAFARDRDA LAALRATLRE RTLASPLCDA ARFARNLEDA FHGMWARYVA GDTDGTRT
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