Gene BamMC406_0165 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBamMC406_0165 
Symbol 
ID6176172 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia ambifaria MC40-6 
KingdomBacteria 
Replicon accessionNC_010551 
Strand
Start bp197828 
End bp200314 
Gene Length2487 bp 
Protein Length828 aa 
Translation table11 
GC content69% 
IMG OID641679900 
ProductTPR repeat-containing protein 
Protein accessionYP_001806882 
Protein GI172059230 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family
[COG5010] Flp pilus assembly protein TadD, contains TPR repeats 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value0.0585605 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGATA TCCAGCAGGC CCTGCAGGAG GCACTTGCCC ACCACCAGGC CGGGCGTTTC 
GCGCAAGCGA AGACGCTGTA CGACGCGATC CTGCACGCCC AGCCCGGGCA GCCCGATGCA
ATGCACTTCC TCGGGCTGCT CGCGTGCCAG CTGAAGCAGT ACGACGCCGG CCTCGCGTTG
ATGGAGCGCT CGCTCGCCGA GCGACCGGAC GCGTCGTACT TCAACAACCT CGGCAACATG
CTGCGCGAAT GCGGGCGGCT CGACGACGCG ATCGCGCACT ACCGTCGCGC GGTGGCGCTG
CGTCCGGACT ATCCGGAAGC GCACAACAAC CTCGGCAACG CGCTGCGCGA CGCGCGCGAT
CCGGCCGAGG CGATGCAGAG CTGTTCGCGC GCGATCGAAC TGCGCCCCGG CTATGCGGAG
GCCTACAACA ACCTCGGCAA CGTGTTGCAG GACCTGGGCG AGCTGGATGC GGCCGCGGCA
AGCTACGGCA AGGCGATCTC GTTCCATCCC GCGTATGCGG AAGCGCACAG CAACCTCGGC
AACGTGCTGC GCGCACAGGA GCGGCACGCG GACGCGATCG TGCACTACCG TCGCGCGATC
GAACTGAACC CTGCGCTGCG CGTCGCGCAT CGCGGGCTCG CCATTGCGCT GCGGGCCACC
GACGATTTCG ACGGCGCGCT CGAGCATGCG CGCGCGGGGC TCGAACCGGA CGATGCGGAA
GGCCATTGCA CGCTCGGGCG GTCGCTGCGC AGCATGAACG ACTTCGACGG CGCGGCGCGC
TTGTTCGAGC GCGCGTGCGA GATCGATCCC GGCTACGCGC CGGCATGGTG CCGGCTCGGC
GAGCTGCGTT GCCAGCAGGG CGAATACGAG GAATCCCTGC GCCTGTGCCG GCACGCGATC
GAACTCGATC CCGAACTCGC GGATGCGTAC AACTTCCTCG GTCTCGCGTA TCACAACCTC
GACCGCATGG CGGCGTCGGA GCTGAGCCAT CGCCACGCGA TCGACCTGAA TCCGGACGAC
GCGGATGCGC ACCACAATCT CGCGGCCGCG CTGTTCCGTC TCGACAAGCT CGACGAGGCG
ATGAGCGAAT ACCGGATCGC GCAGGAACTC GGCGTCGATC CGGTGAAGAT CCAGCTGACG
CTCGGCGACA TCCTGTGGGC CAAGCGCGAT TTCGCCGGTG CGGTCGCGGC CTTCCGCGAA
GCAGTCGAAC ACGATCCGCA CCGCGCTTAC GCCCGGCTGC TGTTCAACAT GTCGAGCTCG
CCGGCGTTCG CGCCGGAGGA GTGGGTCGTC GATGCGCAGC GCTACGGAGA TTACCTCGCG
CGCGACGCGC GGCTGCTGTC GCATGACCGC GAGCAGCGTG CGCGGCAGGC GCGCGGCCGG
CCGTTGCGCG TCGGCTTCGT GTCCGGTGAC CTGCGTCAGC ATCCGGTCGG GATCTTCCTC
GAAAGCGTGC TCGCGCATCT CGATCGCACG CGCATCGAGC CGCATGCGTA CGTGACCTTC
GTGGTGGAGG ACGACGTGAC CGCGCGGCTG AAGTCGGGCT TCGCGAGCTG GAAGAAGCTC
ACGTGCCTGA ATCGCGACCA GGCCGCGCGA ATGATCCACG ACGACGGCAT CGACGTGCTC
GTCGATCTGG CCGGCCACAC CAACTGGAGC GGGCTGCCCG TGTTCGCGCA CCGGCCCGCG
CCCGTGCAGG CGAGCTGGCT CGGCTTCTTC GCGACGACCG GCTGCCGCGC GATCGACTAC
TTCATCGGCG ACCCGCATAC GCTGCCGGCC GACGAGGCGC ATCACTTCGT CGAGCAACCG
TGGCATTTGC CGGACAGCTA CCTGTGCTTC ACGCCGCCGG CTTACGACGT CGCGGTCGGC
CCGCTGCCGA TGGCCACGAA CGGTGGCGTG ACGTTCGGCT GCTTCGGCAA GCTCACGAAG
ATCAGCGACG ACGTGATCGC GCTGTGGTCG CGCCTGCTGC ACGCGCTGCC CGATGCGCGG
CTGATGCTGA AGGCGCACGA GCTCGGCGCG AGCGACCTGA ACCGCGCGAC GCTCGAGCGC
TTCGCGCGGC ACGGCATCGG CTCGCACCAG CTGATCCTCG AAGGCGGTTC GCCGCGCGCG
GAGTATTTCA ACGCGTACAA CCGGATCGAC ATCGCGCTGA GCCCGTTCCC GTATCCGGGC
GGCACGACGA CGGCCGAAGC GCTGTGGATG GGCGTGCCGG TGATCGGGAT GAAGGGCGGC
CGCTTCGTCA CGCATATCTG CGAAAGCCTG CTGCATGCGG CCGGGATGGG CGACTGGATC
GCCGCCGACG AGGACGCGTA TCTCGCGAAG GCGATCGCGT TCGCGCGCGA TCGCGACGCG
CTGGCGGCGT TGCGCGCGAC GCTGCGCGAA CGCACGCTCG CGTCGCCGCT GTGCGATGCG
GCGCGTTTCG CCCGCAATCT CGAGGATGCG TTCCACGGGA TGTGGGCGCG CTACGTGGCC
GGCGACACGG ACGGCACCCG CACATGA
 
Protein sequence
MNDIQQALQE ALAHHQAGRF AQAKTLYDAI LHAQPGQPDA MHFLGLLACQ LKQYDAGLAL 
MERSLAERPD ASYFNNLGNM LRECGRLDDA IAHYRRAVAL RPDYPEAHNN LGNALRDARD
PAEAMQSCSR AIELRPGYAE AYNNLGNVLQ DLGELDAAAA SYGKAISFHP AYAEAHSNLG
NVLRAQERHA DAIVHYRRAI ELNPALRVAH RGLAIALRAT DDFDGALEHA RAGLEPDDAE
GHCTLGRSLR SMNDFDGAAR LFERACEIDP GYAPAWCRLG ELRCQQGEYE ESLRLCRHAI
ELDPELADAY NFLGLAYHNL DRMAASELSH RHAIDLNPDD ADAHHNLAAA LFRLDKLDEA
MSEYRIAQEL GVDPVKIQLT LGDILWAKRD FAGAVAAFRE AVEHDPHRAY ARLLFNMSSS
PAFAPEEWVV DAQRYGDYLA RDARLLSHDR EQRARQARGR PLRVGFVSGD LRQHPVGIFL
ESVLAHLDRT RIEPHAYVTF VVEDDVTARL KSGFASWKKL TCLNRDQAAR MIHDDGIDVL
VDLAGHTNWS GLPVFAHRPA PVQASWLGFF ATTGCRAIDY FIGDPHTLPA DEAHHFVEQP
WHLPDSYLCF TPPAYDVAVG PLPMATNGGV TFGCFGKLTK ISDDVIALWS RLLHALPDAR
LMLKAHELGA SDLNRATLER FARHGIGSHQ LILEGGSPRA EYFNAYNRID IALSPFPYPG
GTTTAEALWM GVPVIGMKGG RFVTHICESL LHAAGMGDWI AADEDAYLAK AIAFARDRDA
LAALRATLRE RTLASPLCDA ARFARNLEDA FHGMWARYVA GDTDGTRT