| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0164 |
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| Symbol | |
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| ID | 6177861 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia ambifaria MC40-6 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010551 |
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| Strand | + |
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| Start bp | 195330 |
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| End bp | 197831 |
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| Gene Length | 2502 bp |
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| Protein Length | 833 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 641679899 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_001806881 |
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| Protein GI | 172059229 |
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| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF
[COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.863115 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGAGTCGA TTGAACTGCA ATTGCGCGCG GCGCTCGCGC ATCACGAGGC CGGGCGTCTC
GGGGAAGCAA AGACGCTCTA CGACGCGATC CTGCACGCGC AGCCCGGGCA GCCCGATGCG
ATGCACTTCC TCGGGCTGCT CGCGTGCCAG TTGAAGCAGT ACGACGCGGG CCTCGTGTTG
ATGGAGCGCT CGCTCGCCGA GCGGCCGGAC GCGTCGTACT TCAACAACGT CGGCAACATG
CTGCGCGAAT GCGGGCGGCT CGACGACGCG ATCGCGCACT ACCGTCGCGC GGTGGCGCTG
CGTCCGGACT ATCCGGAAGC GCACAACAAC CTCGGCAACG CGCTGCGCGA CGCGCGCGAT
CCGGCCGAGG CGATGCAGAG TTGTTCGCGC GCGATCGAAC TGCGCCCCGG CTACGCGGAG
GCATACAACA ACCTCGGCAA CGTGCTGCAG GACCTGGGCG AACTGGATGC GGCCGCGGCA
AGCTACGGCA AGGCGATCGC ATTCCATCTC GCGTATGCGG ACGCATACAG CAACCTCGGC
AACGTGCTGC GCGCACAGGG GCGGCACGCG GACGCGATCG TGCATTACCG TCGCGCGATC
GAACTAAACC CTGCGCTGCG CGTCGCGTGT CACGGCCTCG GCCTGTCGCT GTGGGCGCTC
GGCGAACTGA GCGAAGCCGC GAGCGTGCTG GGCGCCGCCG CGGCCGGGTC GGACGACGCG
AGCCTGCACA ACAACTACGC GGGCGTGCTG CTCGATGCGG GCGACCTCGA CGCCGCCGCG
GCGCACTACG CACGCGCGAT CGCGCTCGAT GCGTCGCTGG CTCTCGCACA TGCGAACCTG
AGCGGCGTGC GGCGCCGTCA GGCGCGTTAT GCGGACGCGC TCGTGCATGC GCAGGATGCG
GTCCGCATCG CGCCGGATCT CGCCGATGCG CACAACCAGG CGGGCAACGC TCACCACGGC
CTGGGCGATC TCGTCGCGGC GCAAGCGTGC TACCGCACCG CGCTCGAGCT GAATCCGGCC
GACAGCGGCG CGTGCCACAA CCTGTCGGTC GTGCTGCTCA AGCGCGAGCG GCACGCCGAG
GCGCTCGCGT ATTGCCGGCG GGCGCTGGCG GGCGGCCGCC CGACCGTGTC GATGTACGTG
AATCTTGGCG ACATCCTGCG CGCGCAGGGC AACGTCGACG CCGCAGTGCC CGCATATCGC
GACGCGCTCG CGCTGGTGCG CGACGACGCG AGCGACGATG CGGCGGAGGT GCTCGGCCGC
CTGCTGTTCG CCGCCGCGGC ATCGGCGACC GTGTCCCCCG CCGACTATCT GAACGACGCG
CGCCGCTACG GCCGTCACCT CGCGGCGCGT TCGACGCGCT ATACGCATGA CGTGCGCGCA
CGCGCGGCCG ACGCGCTGCA CCGCCCGCTG CAGGTCGGCT TCGTATCCGG CGACCTGCGG
CAGCACCCGG TCGGGATCTT TCTCGAAAGC GTTTTCGCGC ATCTCGATCG CACGCGCGTT
GCGCCGTACG TGTACACGAC GTCGGACGAA GCGGACGCGA TCACCGCGCG ACTGAAGCCG
CACGCGGCCG TCTGGCGTTC GATCGCCGGT TGCGATCCGC GAGCCGCCGC CCGCACGATT
CACGACGACG GCATCGACGT GCTCGTCGAC CTCGCCGGCC ATACGCAGGC GAGCGGCCTG
GCCGCCTTCG GCTGGAAGCC GGCGCCCGTG CAGGCGAGCT GGCTCGGCTT CTTCGCATCG
ACGGGCTGCG ACGCGATCGA CTATTTCATC GGCGACGCGC GGACGTTGCC GGCCGACGAG
GCCCATCACT TCGTCGAGCA GCCGTGGCAT TTGCCGGATA GCTACCTGTG CTTCACGCCG
CCGTCCGACG ACGCCGCGGT CGGCCCGCTG CCGATGGCCG CGAACGGCCA TGTCACGTTC
GGCTGTTTCG GCAAGCTCGT GAAGCTCGGC GACGACGTCG TGCGCGTGTG GTCGCGCGTG
CTGGATGCGC TGCCCGGCGC ACGGCTGTTG CTGAAGGCGC GCGAACTCGA ACAGGCGGCG
GTGCGCGACG CGACCGCCGC GCGCTTCGCA CGGCATGGGA TCGACGCGAG CCGGCTGCTG
TTCGATGGCG CATCGCCGCG CGCGGAGTAT TTCGCGGCGT ACAACCGGAT CGATGTCGCG
CTGAGCCCGT TCCCGTACCC GGGCGGCACG ACGACGGCCG AGGCGCTGTG GATGGGCGTG
CCGGTGCTCG GGATGAAGGG CGGACGGTTC GTCACGCACA TCTGCGAGAG CCTGCTGCAC
GCGGCCGGGA TGCCCGACTG GATCGCCGGC GATGAGGACG ACTATGTCGC GAAGGCGGTC
GCGGCCGCGC AGGACGGCGC GCGGCTGGCG GTGTTGCGCG CGACGCTGCG CGAACGCACG
CTCGCGTCGC CGCTGTGCGA TGCGGCACGC TTCGCGCGCA ATCTCGAAGA TGCCTTCGTC
GGCATGTGGA CACGCTATAC GGAAACGGCA CAGACAGCAT GA
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| Protein sequence | MESIELQLRA ALAHHEAGRL GEAKTLYDAI LHAQPGQPDA MHFLGLLACQ LKQYDAGLVL
MERSLAERPD ASYFNNVGNM LRECGRLDDA IAHYRRAVAL RPDYPEAHNN LGNALRDARD
PAEAMQSCSR AIELRPGYAE AYNNLGNVLQ DLGELDAAAA SYGKAIAFHL AYADAYSNLG
NVLRAQGRHA DAIVHYRRAI ELNPALRVAC HGLGLSLWAL GELSEAASVL GAAAAGSDDA
SLHNNYAGVL LDAGDLDAAA AHYARAIALD ASLALAHANL SGVRRRQARY ADALVHAQDA
VRIAPDLADA HNQAGNAHHG LGDLVAAQAC YRTALELNPA DSGACHNLSV VLLKRERHAE
ALAYCRRALA GGRPTVSMYV NLGDILRAQG NVDAAVPAYR DALALVRDDA SDDAAEVLGR
LLFAAAASAT VSPADYLNDA RRYGRHLAAR STRYTHDVRA RAADALHRPL QVGFVSGDLR
QHPVGIFLES VFAHLDRTRV APYVYTTSDE ADAITARLKP HAAVWRSIAG CDPRAAARTI
HDDGIDVLVD LAGHTQASGL AAFGWKPAPV QASWLGFFAS TGCDAIDYFI GDARTLPADE
AHHFVEQPWH LPDSYLCFTP PSDDAAVGPL PMAANGHVTF GCFGKLVKLG DDVVRVWSRV
LDALPGARLL LKARELEQAA VRDATAARFA RHGIDASRLL FDGASPRAEY FAAYNRIDVA
LSPFPYPGGT TTAEALWMGV PVLGMKGGRF VTHICESLLH AAGMPDWIAG DEDDYVAKAV
AAAQDGARLA VLRATLRERT LASPLCDAAR FARNLEDAFV GMWTRYTETA QTA
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