| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BamMC406_0021 |
|---|
| Symbol | |
|---|
| ID | 6176515 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia ambifaria MC40-6 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010551 |
|---|
| Strand | - |
|---|
| Start bp | 30203 |
|---|
| End bp | 30679 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641679756 |
|---|
| Product | alkylhydroperoxidase |
|---|
| Protein accession | YP_001806739 |
|---|
| Protein GI | 172059087 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2128] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | [TIGR00778] alkylhydroperoxidase AhpD family core domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.106747 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTGCGA AACTCAATCC GTTTGCCGCC GCCCCCGCGC TGATGAAGAG CTGGATGACC
GTATCGGTCG ATGCTGCCGG GAGCCTCGAG CCGACGCTGA TCGAGCTGGT CAAGATCCGC
GCATCGCAGA TCAACGCGTG TGCGAACTGC CTTAACATGC ACACCGTCGA GGCGCGCGAG
CAAGGCGAGA CCGAGCAGCG CATCAACCTG CTGGCCGCCT GGCGCGAAGC GCCCTGCTAC
ACCGATCGCG AACGCGCGGC GCTCCGCTGG ACCGACGCGC TCACGCGGCT GTCGGAAGGC
CACGGCGCGC ACGAGGCCGC GTATGCGGCG CTGAACGACC ACTTCAGCCA GGAGGAACAG
GTGAAACTCA CGCTGATGAT CAACGTGATC AACGGCTGGA ACCGGCTTGC CGTCGGCTTC
GGGCTGTGGG TCGATCCGGC CGAAGCGAAG GCCGCGGCCG CGAAGATGGT GGCCTGA
|
|---|
| Protein sequence | MTAKLNPFAA APALMKSWMT VSVDAAGSLE PTLIELVKIR ASQINACANC LNMHTVEARE
QGETEQRINL LAAWREAPCY TDRERAALRW TDALTRLSEG HGAHEAAYAA LNDHFSQEEQ
VKLTLMINVI NGWNRLAVGF GLWVDPAEAK AAAAKMVA
|
|---|
| |