| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1780 |
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| Symbol | |
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| ID | 6183991 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | + |
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| Start bp | 1550829 |
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| End bp | 1553591 |
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| Gene Length | 2763 bp |
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| Protein Length | 920 aa |
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| Translation table | 11 |
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| GC content | 47% |
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| IMG OID | 641672278 |
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| Product | DNA topoisomerase III |
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| Protein accession | YP_001798447 |
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| Protein GI | 171464334 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 62 |
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| Fosmid unclonability p-value | 0.778999 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGCAACTA AAGCAACTAT CAAAAAAAGC AGCTCAAAGA CTACCGCCGG GGATAGCCCG
AAGGCGCTCA TCATTGCAGA GAAGCCTTCT GCTGCCAATG ACATTGCCAA GGCCTTAGGC
GACTTTACAA AATATGAAGA TTATTTTGAG AGCGATGAAT ATCTAATTTC ATCTGCAGTA
GGCCATTTAT TAGAATTCGC CGCCCCTGAA GAGTTTGACG TAAAGCGCGG CAAATGGTCT
TTTGCTAACT TACCAGTGGT GCCCCCTTAT TTTGATTTGC GTCCAATTGC AAAAACGGAA
TCACGCTTAA AGGTTTTACA AAAACTGATT AAGCGTAAAG ATGTTACGGC ACTCATTAAT
GCCTGCGACG CGGGACGCGA GGGCGAGTTG ATTTTTCGTT TAATTACGCA GCATGCAAAA
GCATCCCAAT CCATCAAGCG TCTGTGGTTG CAATCGATGA CACCAGCAGC AATTCGTGAC
GGATTTGCCA ACTTACGAAC CGATGAAGAC ATGCAACCCC TCGCAGACGC AGCGCGTTGT
CGCTCTGAAG CAGATTGGTT GGTTGGCATC AATGGCACGC GTGCAATGAC CGCTTTTAAC
AGCAAGAGTG GTGGCTTCTT TTTAACTACC GTGGGTCGCG TTCAAACTCC AACCCTTTCG
ATTGTGGTTG AGCGAGAAGA GCTGATCCGT AAATTTATCT CTAAAGATTA TTGGGAGGCG
AAAGCGGAGT TCATTACCGC GGCGGGTGTG TATGAGGGTC GCTGGTTTGA TCCGAAATTT
AAAAAAGATG TCGCTGAACC AGATACACGA GAAAGCCGCC TGTGGAGCGA AGCAGCTGCG
CAAAGCATTG TGGCTGCATG CCGGGGTAAA AAAGCAAACG TCACCGAAGA AGCTAAGCCC
GCCACACAGC TTGCACCGCA ATTATTTGAC CTCACGAGCT TGCAGCGCGA AGCAAATGCA
CGCTTTGGCT TTTCAGCAAA AAATACATTA GGTCTTGCAC AGTCTTTATA TGAAAGACAC
AAGGTATTAA CTTATCCGCG CACTGATGCA AAAGCACTCC CTGAGGATTA CCTCAATACG
GTTAAACAAA CCATGGAGAA TCTTTCAGAG CACTCGCAAG AGTATCGTGC CTTTGCCAAA
CAAATTTTGC AAGGCGATTC TAAAGATTCA AAAGCAAAAG AGGGTTATGG CTGGATAAAA
CCAAACAAAC GTATTTTCGA TAATTCAAAA ATTTCTGATC ACTTTGCGAT CATTCCAACA
CTAGAAACAC CCAAGAGCTT GAGCGAGCCT GAAGCAAAGC TCTACAATTT AGTAGTGCGT
CGCTTCTTGG CGGTGTTTTA CCCTGCAGCA GAGTTCCGCG TTACCACTCG CATCACAGAG
GCGTCTGGGC ACCACTTTAA AACGGAAGGT CGTGTGCTTG TAAACCCAGG CTGGCTAACG
GTTTATGGCA AATCCAACCA GGCAGATGAT GAACTGGTTC CAGTTCAAGA GGGCGAATCT
GTTCAAACCG AATCTATAGC GGCCGTGCCT TTGAAAACCA AGCCGCCCGC ACGCTATACA
GAAGCAACAC TTTTATCCGC AATGGAGAGC GCGGGCAAGT GGGTAGATGA TGATGAGATG
CGCGAAGCTA TGGCAGAGAA AGGCTTGGGT ACGCCCGCAA CACGCGCCGC CATTATTGAG
GGTCTACTGG CAGAAAAATA TATTGTGCGA GAAGCTCGTG AACTTATTCC AACAGCCAAA
GCATTTCAGT TAATGACTTT ATTGCGCGGC TTAGATGTTG AAGAATTAAC TCGCCCTGAT
TTGACTGGTA GCTGGGAAAA CAAACTTTCT CTCATCGAAC AAGGAAAAAT GAATCGCGAT
ACCTTCATGC AAGAGATCGC ACAAATGACC CAGCGCATCG TAAAGCGTGC CAAAGAATAC
GACAGCGATA CGATTCCCGG CGATTACACC ACCATGACCA CGCCATGCCC GCACTGTAAG
GGTCAGGTGA AGGAAAACTA TCGTCGATTT GCGTGTGAAA AATGCGGTTT TACTATTAGC
AAAACACCGG GTGGGCGTGC CTTTGAATAT CCTGAGGTCG AAGAATTGCT TCGTGAAAAA
ACCATTGGTC CATTGCAAGG ATTTCGCAGC AAAATGGGAA GACCATTTGC AGCCATTATT
AAATTAAGCG AAATTCCGGA AGATGATAAA GATTATCCAA ACGCAGGCTA TAAGCTAGAG
TTTGATTTTG GTAACGCGCA AGATAATGAA ACTGAAGCGG TTGATTTCAC GGGTCGTCAG
GCATTGGGCT CTTGCCCGAA ATGCTCTGGT GCCGTATACG AAGACGGTAT GCGTTACGTT
TGTGAAAGCA ACACAGGTCC AAGCAAATCC TGTGATTTCA AAACTGGGAA AGTGGTCTTG
CAACAAGAAG TATCGCCAGA GCAAGTTCAG AAATTATTAA AAGAAGGCAA AACAGATCTT
CTAACCAACT TTAAATCGAA CCGGACTGGT CGTGGCTTTA AGGCTTACTT GGCTTTAAAT
TCAGCAGGCA AAATTGGCTT TGAGTTTGAA GCAAAAGCGC CTAAAGCTGA GGGCGAAACC
AAAGCTTCCG CAAAGAAACG GGCAGGCGCA AGCGCTGCCA GCAAGTCTGC AGCGAAACCG
AAGCGCGCAA GCAAAGCAAA ATCGTCCTCT AGTAGCCGAG CGGTAATCAG CTTTGCCGCT
AGAGCGGACC ACAAAATTCC TCTCGACCCT AGGGCTATAG CCAAGAACAT TCCTGGGCGT
TGA
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| Protein sequence | MATKATIKKS SSKTTAGDSP KALIIAEKPS AANDIAKALG DFTKYEDYFE SDEYLISSAV
GHLLEFAAPE EFDVKRGKWS FANLPVVPPY FDLRPIAKTE SRLKVLQKLI KRKDVTALIN
ACDAGREGEL IFRLITQHAK ASQSIKRLWL QSMTPAAIRD GFANLRTDED MQPLADAARC
RSEADWLVGI NGTRAMTAFN SKSGGFFLTT VGRVQTPTLS IVVEREELIR KFISKDYWEA
KAEFITAAGV YEGRWFDPKF KKDVAEPDTR ESRLWSEAAA QSIVAACRGK KANVTEEAKP
ATQLAPQLFD LTSLQREANA RFGFSAKNTL GLAQSLYERH KVLTYPRTDA KALPEDYLNT
VKQTMENLSE HSQEYRAFAK QILQGDSKDS KAKEGYGWIK PNKRIFDNSK ISDHFAIIPT
LETPKSLSEP EAKLYNLVVR RFLAVFYPAA EFRVTTRITE ASGHHFKTEG RVLVNPGWLT
VYGKSNQADD ELVPVQEGES VQTESIAAVP LKTKPPARYT EATLLSAMES AGKWVDDDEM
REAMAEKGLG TPATRAAIIE GLLAEKYIVR EARELIPTAK AFQLMTLLRG LDVEELTRPD
LTGSWENKLS LIEQGKMNRD TFMQEIAQMT QRIVKRAKEY DSDTIPGDYT TMTTPCPHCK
GQVKENYRRF ACEKCGFTIS KTPGGRAFEY PEVEELLREK TIGPLQGFRS KMGRPFAAII
KLSEIPEDDK DYPNAGYKLE FDFGNAQDNE TEAVDFTGRQ ALGSCPKCSG AVYEDGMRYV
CESNTGPSKS CDFKTGKVVL QQEVSPEQVQ KLLKEGKTDL LTNFKSNRTG RGFKAYLALN
SAGKIGFEFE AKAPKAEGET KASAKKRAGA SAASKSAAKP KRASKAKSSS SSRAVISFAA
RADHKIPLDP RAIAKNIPGR
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