| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1725 |
|---|
| Symbol | |
|---|
| ID | 6184488 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | + |
|---|
| Start bp | 1509131 |
|---|
| End bp | 1509913 |
|---|
| Gene Length | 783 bp |
|---|
| Protein Length | 260 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 641672228 |
|---|
| Product | exodeoxyribonuclease III Xth |
|---|
| Protein accession | YP_001798398 |
|---|
| Protein GI | 171464285 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0708] Exonuclease III |
|---|
| TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.569641 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 82 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTACGCA TCATTTCCGC GAACCTCAAC GGTATCCGCT CTGCAATCAA AAAAGGCTTT
CTGCCATGGG CGGTTCAGCA AAAAGCTGAC TTCATTTGTA TGCAGGAGCT CAAAGCTCAA
CGTGACGACC TGGAAGATAC CATTCTCAAT CCCGATGGCA TGCATGGCTT TTTTCATCAC
GCCGAGAAAA AAGGCTATAG TGGGTGCGGC ATCTATGCCC CCTACAAACC TGATGAGGTT
TTATACGGAT ATGGCAATGC AGAATTTGAT GCTGAGGGAC GCTATGTAGA AGCGCGCTTT
AAAGGGTTGT CCGTCATTTC AGTCTATATG CCTTCCGGTT CGAGCTCACC TGAGCGTCAA
GAGGCCAAAT ATCGCTATCT CGATAGCTTT TTGCCGCATC TCGTAGCTCT TAAAAAGTTA
GGTCGAGAAA TCGTGCTTTG TGGCGACGTC AATATTGCCC ATCAAGAAAT TGATCTGAAA
AATTGGAAAG GCAATCTGAA AAATTCTGGA TTCTTACCTG AAGAGCGTGC ATGGCTAACC
AATCTATTTA GCAAAGTGGG TTACGTCGAT GTCTATCGAC AGCTCGAGCC TAAAGCAACT
GAGACTTGTT ACACATGGTG GAGTAATCGC GGACAGGCTT ATGCAAAAAA TGTGGGTTGG
CGCATTGACT ATCACATCAG CACACCAGGT ATTGCTCAAA CCGCAAAAAA AGCCACCGTA
TACAAAGATG AAAAATTTTC AGACCATGCA CCGCTTACCG TGGATTATGA CTGGAAGCTT
TAA
|
|---|
| Protein sequence | MLRIISANLN GIRSAIKKGF LPWAVQQKAD FICMQELKAQ RDDLEDTILN PDGMHGFFHH
AEKKGYSGCG IYAPYKPDEV LYGYGNAEFD AEGRYVEARF KGLSVISVYM PSGSSSPERQ
EAKYRYLDSF LPHLVALKKL GREIVLCGDV NIAHQEIDLK NWKGNLKNSG FLPEERAWLT
NLFSKVGYVD VYRQLEPKAT ETCYTWWSNR GQAYAKNVGW RIDYHISTPG IAQTAKKATV
YKDEKFSDHA PLTVDYDWKL
|
|---|
| |