| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1676 |
|---|
| Symbol | |
|---|
| ID | 6184579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010531 |
|---|
| Strand | - |
|---|
| Start bp | 1466939 |
|---|
| End bp | 1467427 |
|---|
| Gene Length | 489 bp |
|---|
| Protein Length | 162 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641672191 |
|---|
| Product | rfaE bifunctional protein |
|---|
| Protein accession | YP_001798361 |
|---|
| Protein GI | 171464248 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG2870] ADP-heptose synthase, bifunctional sugar kinase/adenylyltransferase |
|---|
| TIGRFAM ID | [TIGR00125] cytidyltransferase-related domain
[TIGR02199] rfaE bifunctional protein, domain II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 43 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 75 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGTCATT TGCTATCACC CTCTTTTGAA GCTAAAGTTT GCCCGCCGGA TGAGCTCGCG
GATCGCATAG CAAGTCTTCC TAGGCCTTTG GTGTTCACCA ATGGAGTCTT TGACATCTTG
CATCGTGGCC ATGCCAGTTA TTTGGCGCAA GCACGCGCTT TAGGTGCCAG TCTTGTGGTT
GGCGTAAATT CAGATACCTC GGTCAAGATA CTGGGTAAAG GTGATGATAG ACCGATTAAC
ACTGAAGCTG ATCGTCAGGC CTTATTAGCT GCGTTGGAGA GTGTAGATAT GGCTGTGTTG
TTTACCGAAC AAACCCCAGT CACTCTCATT GAAAAAATTC GTCCCGATAT CTACGTTAAA
GGTGGAGATT ATGAGATTGA CACCTTAGCC GAGACCCATC TAGTAAAAAG CTGGGGCGGT
AAGGCGATTG CTATACCGTT TTTATACGAA CGATCAACTA CTAGTCTTTT GGGTAAGATT
CGCTCTTAA
|
|---|
| Protein sequence | MSHLLSPSFE AKVCPPDELA DRIASLPRPL VFTNGVFDIL HRGHASYLAQ ARALGASLVV
GVNSDTSVKI LGKGDDRPIN TEADRQALLA ALESVDMAVL FTEQTPVTLI EKIRPDIYVK
GGDYEIDTLA ETHLVKSWGG KAIAIPFLYE RSTTSLLGKI RS
|
|---|
| |