Gene Pnec_1644 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1644 
Symbol 
ID6183465 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1442406 
End bp1444013 
Gene Length1608 bp 
Protein Length535 aa 
Translation table11 
GC content48% 
IMG OID641672162 
Productcytochrome c oxidase, subunit I 
Protein accessionYP_001798332 
Protein GI171464219 
COG category[C] Energy production and conversion 
COG ID[COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 
TIGRFAM ID[TIGR02891] cytochrome c oxidase, subunit I 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.336541 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones65 
Fosmid unclonability p-value0.908171 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCACAG TCTCTACTAC CCACGATCAC GCGCATAATG ATCATATGTC ACATGGCTGG 
CGTCGTTGGT TGTTTGCAAC CAACCACAAA GACATCGGCA CGATGTATTT GATCTTCTCA
TTCGTTAGCT TGTTGGCTGG CGGCGTGATG GCCTTGGGAA TTCGTTTGGA ATTATTCCAA
CCAGGATTGC AATTTTTGCG TCCAGAGTTC TTTAATCAAT TAACCACCAT GCACGGTTTG
GTGATGGTGT TCGGCGCGAT CATGCCGGCC TTCGTTGGTT TTGCGAACTG GATGGTGCCT
TTGCAAATCG GCGCGTCTGA TATGGCATTT GCCCGTATGA ATAACTTTAG CTTCTGGATT
CTTCCAGTGG CGGCAACATT GTTGTTGAGT TCATTCCTTG TTCCTGGTGG CGCTCCATCG
GGTGGTTGGA CCATCTATGC TCCATTGACC TCGCAAATGG GTCCTGGCAT GGATATGGCG
ATTTTTGCGC TCCACTTGTT GGGTGCTTCA TCCATCATGG GCTCAATTAA CATCATCGTA
ACGATTTTGA ATATGCGCGC TCCTGGCATG ACGTTGATGA AGATGCCAAT GTTCTGCTGG
ACTTGGTTGA TCACTGCGTA CTTGTTGATT GCTGTGATGC CTGTGTTGGC TGGCGCGATC
ACGATGGTTC TGACTGACCG TCATTTCGAT ACTTCATTCT TCTCTGCTGT TGGCGGCGGT
GACCCAATCA TGTTCCAGCA TATTTTCTGG TTCTTTGGTC ACCCAGAGGT TTACATCATG
ATTCTTCCGG CATTCGGAAT CATTAGCGAA ATCGTTCCTG CTTTCTCCAG AAAGACATTG
TTTGGCTATA GCTCTATGGT TTACGCAACC GCATCGATTG CGATCTTGTC GTTCATCGTT
TGGGCTCACC ACATGTTTGC CACTGGTATG CCGGTAACTG GCCAATTGTT CTTTATGTAC
GCAACCATGT TGATCGCTGT TCCAACTGGT GTGAAGATTT TCAACTGGGT AGCAACAATG
TGGAAAGGTT CAATGACCTT TGGAACCCCA ATGTTGTGGG CTATCGGCTT TATCTTCGTT
TTCACCATGG GCGGCTTTAC TGGTTTGATC TGTGCAATGG CACCAATTGA TATCGGTATT
CAAGATACTT ATTACATCGT TGCTCACTTC CACTACGTAT TGGTAGCGGG TTCATTGTTC
GCAATGTTCG CTGGCTTCTA CTACTGGTGC CCTAAGTGGA CTGGCTACGT GGCTAGCGAA
ACTCGCGGCA AGATCCATTT TTGGGCTTCC ATGATTTTCT TTAACATCAC CTTCTTCCCA
ATGCACTTTT TAGGTTTAGC AGGTATGCCA CGTCGCTATG CTGACTACCC AACCCAGTTT
GCCGATTTCA ATGCGATTGC TTCGATTGGC GCGTTGGGCT TCGGTTTGGC GCAGGTTTAT
TTCTTGCTCT TCGTTGTTAT GCCAGCGTAC CGCGGTCAAG GCGAAAAAGC GCCGATGAAA
CCATGGGATG GTGCAAAAGG TTTGGAGTGG ACAGTGCCTT CTCCAGCGCC ACATCACACT
TTTGAAAATC CGCCTAGTGT AGAGCAAATG CGTGAAGCAG GAATTTAA
 
Protein sequence
MSTVSTTHDH AHNDHMSHGW RRWLFATNHK DIGTMYLIFS FVSLLAGGVM ALGIRLELFQ 
PGLQFLRPEF FNQLTTMHGL VMVFGAIMPA FVGFANWMVP LQIGASDMAF ARMNNFSFWI
LPVAATLLLS SFLVPGGAPS GGWTIYAPLT SQMGPGMDMA IFALHLLGAS SIMGSINIIV
TILNMRAPGM TLMKMPMFCW TWLITAYLLI AVMPVLAGAI TMVLTDRHFD TSFFSAVGGG
DPIMFQHIFW FFGHPEVYIM ILPAFGIISE IVPAFSRKTL FGYSSMVYAT ASIAILSFIV
WAHHMFATGM PVTGQLFFMY ATMLIAVPTG VKIFNWVATM WKGSMTFGTP MLWAIGFIFV
FTMGGFTGLI CAMAPIDIGI QDTYYIVAHF HYVLVAGSLF AMFAGFYYWC PKWTGYVASE
TRGKIHFWAS MIFFNITFFP MHFLGLAGMP RRYADYPTQF ADFNAIASIG ALGFGLAQVY
FLLFVVMPAY RGQGEKAPMK PWDGAKGLEW TVPSPAPHHT FENPPSVEQM REAGI