Gene Pnec_1604 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPnec_1604 
Symbol 
ID6183517 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePolynucleobacter necessarius subsp. necessarius STIR1 
KingdomBacteria 
Replicon accessionNC_010531 
Strand
Start bp1402706 
End bp1406545 
Gene Length3840 bp 
Protein Length1279 aa 
Translation table11 
GC content46% 
IMG OID641672122 
ProductFAD linked oxidase domain protein 
Protein accessionYP_001798293 
Protein GI171464180 
COG category[C] Energy production and conversion 
COG ID[COG0247] Fe-S oxidoreductase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones66 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACGCCC CATTAGCTTT GAACCAGTTG TTGGACGCTG AGGCAGGCTC CCCCCGTCTG 
CGTGAAATTC CTTACAACTA CACCTCCTTT TCCGATCGAG AGATTGTTAT TCGCTTATTG
GGCGAGGAGT CTTGGCGCGT ATTGAATAAC TTACGTGGCG TTCGCCGCAC AGGCCGTTCC
GCACGGATGT TATTTGAAAT TCTCGGCGAT ATCTGGGTTG TTCAACGCAA CCCATTCTTA
CAAGATGACT TGCTTGATAG TCCAAATCGT CGCAAACAGT TAATCGATGC GCTTTGGTAT
CGATTGGGCG AGGTTAAGAA ACGTAATAGT GGTGATTCAG CAGATCAAGT AGAAATTTTA
TTGAGTGCCG CTTATCGTGC CATTGAAAAT TTCGAAAACG GATTTAAAGA AGTTGAGCAA
ATTCGTAAAC GTGCTCGTAA GGAATTAGGT CGTCATACCG CAGCGGACAA TATTTGTTTT
GATGGTGTGT CGCGCGCTGC TCACGTTACC GATGCAACTG ACTGGCGCGT TGAGTTTCCG
CTCGTTGTTT TAAAGCCAGA TTATGAATCT GAAATCCCGG GTTTAGTTAA AGCTTGTGTT
GGATTGGGTT TGACAATTAT TCCTCGTGGA GGCGGTACTG GTTATACAGG CGGTGCAATT
CCACTTTACG AAATGTCCGC GGTAATTAAC ACTGAGAAAC TGCAAGATAT TGGCGGCGTT
AAATCCAAAA AGCTTCCTGG TTTAGATCGC GAAGTATCAA CGATTTTCAC GGGTGCAGGC
GTGGTTACTC GGCGTGTTTC TGACGCTGCA GAGCTCGCCG GGCTTGTGTT TGCTGTTGAT
CCCACATCTG CAGATGCTAG CTGTATTGGC GGCAATATCG CGATGAATGC TGGCGGTAAA
AAAGCGGTTC TTTGGGGAAC TGCTTTAGAC AATCTCGCTA GCTGGCGCAT GGTCGATCCT
GAAGGCAACT GGTTAGATGT TGAGCGTCTC GAGCACAACA TGGGCAAGAT CCATGATGTT
GCAACAGTGC GCTTTCAATT GACTTGGTCT GATGGCAATA GCGAGCCAGG GCAACGCATT
CTGAAAACAG AATTGTTAGA GGTTGAAGGT AGGTGTTTTC GCAAAGAAGG TTTAGGAAAA
GACGTTACTG ATAAATTTTT ATCAGGATTG CCAGGTGTGC AAAAAGAAGG TTGTGATGGC
TTGATTACCA GCGCAACTTG GGTATTGCAT CGCATGCCGA AATTTATGCG CACCATTTGT
TTGGAGTTCT TTGGCCAAGC CCGCGAAGCC ATTCCGAGCA TTGTAGAAAT TAAAGCTTAC
TTAGACGGCT TAAGTAAACA GGGTGGCCCA ATTCTGGCCG GTCTAGAACA TTTGGATGAT
CGCTATTTAA GGGCTGTAGG TTATTCAACA AAATCGAAAC GCAATAGCTT GCCGAAGATG
GTATTGATCG GTGACATTGC GGGTGATGAT GAGGAAGCGG TTGCTGCAGC CACTAGTGAA
GTGGTGCGTA TGGCCAATTT ACGTGTTGGT GAAGGCTTTG TTGCAGTAAG TGCAGAAGCG
CGCAAGAAAT TTTGGTTTGA TCGAGCCCGT ACAGCGGCGA TTGCCCGTCA TACCAACGCA
TTTAAGATCA ATGAAGACGT TGTGATTCCT TTGCCACGCA TGGGCGAATA CACCGACGGC
ATTGATCGCA TCAATATTGA ACTCTCTCTT AAAAATAAGC TGCAAGTGCT TGATGCCCTT
GAGGCCTTCT TGAAAAAGAG CGCCTTACCA CTTGGTAAGA GTGATGCTGA GTATGAGATT
CCAACAGCAG AAATCTTGGG TGATCGTGTT CAGCAAGCTT TAGATCTCAT TGCTAAAGTG
CGTGGGCGTT GGGCTGAGTG GCTCACTGAG ATGGATTTAT ATTTCCCACG TTTGCAAAAT
TACAGCTTGC GCGCCTCTTG GAAAGAGGAA GTGCGTTCAG AGTTGCGCAT CATCTTTGGC
GGTTTGGCGT TTGAGCCTAT TCTCACTGAG TTAGAGGCCA TTCACAAAAA CATTTTGCGT
AAGCGTGTAT TCGTAGCTTT GCATATGCAC GCTGGTGACG GTAACGTTCA TACCAACATT
CCGGTGAACT CCGATGATTA CGAGATGTTG CAAGATGCCC ATCGCGCTGT AGATCGCATC
ATGAAGTTAG CGCGCTCATT AGATGGTGTG ATCTCTGGTG AGCATGGTAT TGGTATTACC
AAGCTAGAGT ATTTGACCGA AGCCGAATTA AAAGACTTCC GTAGTTATAA GAATCGTGTT
GACCCAGAGG GCCGCTTCAA CAAAGGCAAG TTGATGCCCC ATGCCGATCT GAGTATGGCT
TATACACCAA GCTTTGGCTT GATGGGTCAT GAGTCAATCA TCATGCAACA AAGCGATATT
GGTGCGATTG CTGACAGCGT TAAAGATTGT TTGCGTTGTG GCAAATGTAA ACCTGTTTGC
TCAACACATG TACCGCGTGC AAACTTACTC TACAGCCCGC GCGACAAGAT ATTAGGTACT
TCATTGTTGA TTGAAGCCTT CTTGTACGAA GAGCAAACGC GCCGTGGTGT GTCGATTCGC
CATTGGGAAA TGTTTGATGA CGTCGCTGCA CATTGCACCG TATGTCACAA GTGCTTAACG
CCTTGCCCAG TCAAGATTGA CTTCGGTGAT GTGACGATGA ATATGCGTAA TCTCTTGCGC
AAGATGGGTC AACAGCGTTT CAATCCAGGT ACTGTTGCAT CGATGTTCTT CCTCAATGCA
ACTAGTCCAG AGACAATTCA TCTTGCCCGC AAGGCGATGA TTGGTTGGGG TTATAAGTTA
CAGCGTTTAG GCAATGATGT ACTGCGTAAG TTTGCAAAAC AACAAACTGC ACACCCTCCA
GCAACGGTAG GTAAACCAAG CGTTAAAGAG CAAGTGATTT TCTTTGTCAA TAAGAAGATG
CCGGGTAATT TACCGAAGAA GACTGCACGC GCTTTATTGG ATATTGAAGA TGCAAACTAC
GTACCGATTA TTCGCGATCC TAAGACTACT TCTGCAGATA CTGAAGCAGT ATTTTATTTT
CCGGGTTGTG GATCTGAGCG TTTGTTCTCA CAAGTTGGTT TGGCAACGCA AGCAATGCTT
TGGAATGTAG GTGTGCAAAC AGTTCTTCCT CCGGGTTATT TATGCTGTGG TTATCCACAG
CGCGGTAATG GCGACTTTGA TAAAGCTGAG AAGATGATTA CGGATAACCG TGTGTTATTC
CATCGTGTTG CCAATACCTT GAATTACCTG GATATCAAGA CCGTGGTTGT CTCATGCGGC
ACTTGTTATG ATCAGTTGGC CGGCTATCAG TTTGAGCAGA TTTTCCCTGG CTGCCGAATT
ATTGATATTC ATGAGTTCTT AGCTGAGAAG GGCGTCAAGC TCTCAGGCGT TACGGGCGTG
AAGTATATGT ATCACGATCC TTGCCACTCT CCAATGAAGT TGCAAGATCC CCTTAAGATA
GTGAACGAGT TAATTCAATT GGAGGATGGC AAAGCCATTG CCAAGAATGA TCGTTGTTGC
GGTGAGTCTG GAACTTTGGC TGTGACTCGT CCTGATATTT CCACTCAAGT GCGTTTCCGT
AAGCAGATTG AAATGGAAAA GGGTGCTAAT GATTTACGTA AAGGTGATTT CGCTGGCGAC
GTTAAGGTGC TAACGAGCTG CCCATCATGC TTACAAGGTC TGACACGTTT TGATGCAGAT
AGTGAGACGA CTGCTGATTA CATTGTGGTG GAAATGGCTC AGAAGCTGCT CGGTAAGGAT
TGGGTGCAGG ACTACGTGGC CAAAGCAAAT CAAGGTGGTA TTGAGAGGGT TCTCGTTTAA
 
Protein sequence
MNAPLALNQL LDAEAGSPRL REIPYNYTSF SDREIVIRLL GEESWRVLNN LRGVRRTGRS 
ARMLFEILGD IWVVQRNPFL QDDLLDSPNR RKQLIDALWY RLGEVKKRNS GDSADQVEIL
LSAAYRAIEN FENGFKEVEQ IRKRARKELG RHTAADNICF DGVSRAAHVT DATDWRVEFP
LVVLKPDYES EIPGLVKACV GLGLTIIPRG GGTGYTGGAI PLYEMSAVIN TEKLQDIGGV
KSKKLPGLDR EVSTIFTGAG VVTRRVSDAA ELAGLVFAVD PTSADASCIG GNIAMNAGGK
KAVLWGTALD NLASWRMVDP EGNWLDVERL EHNMGKIHDV ATVRFQLTWS DGNSEPGQRI
LKTELLEVEG RCFRKEGLGK DVTDKFLSGL PGVQKEGCDG LITSATWVLH RMPKFMRTIC
LEFFGQAREA IPSIVEIKAY LDGLSKQGGP ILAGLEHLDD RYLRAVGYST KSKRNSLPKM
VLIGDIAGDD EEAVAAATSE VVRMANLRVG EGFVAVSAEA RKKFWFDRAR TAAIARHTNA
FKINEDVVIP LPRMGEYTDG IDRINIELSL KNKLQVLDAL EAFLKKSALP LGKSDAEYEI
PTAEILGDRV QQALDLIAKV RGRWAEWLTE MDLYFPRLQN YSLRASWKEE VRSELRIIFG
GLAFEPILTE LEAIHKNILR KRVFVALHMH AGDGNVHTNI PVNSDDYEML QDAHRAVDRI
MKLARSLDGV ISGEHGIGIT KLEYLTEAEL KDFRSYKNRV DPEGRFNKGK LMPHADLSMA
YTPSFGLMGH ESIIMQQSDI GAIADSVKDC LRCGKCKPVC STHVPRANLL YSPRDKILGT
SLLIEAFLYE EQTRRGVSIR HWEMFDDVAA HCTVCHKCLT PCPVKIDFGD VTMNMRNLLR
KMGQQRFNPG TVASMFFLNA TSPETIHLAR KAMIGWGYKL QRLGNDVLRK FAKQQTAHPP
ATVGKPSVKE QVIFFVNKKM PGNLPKKTAR ALLDIEDANY VPIIRDPKTT SADTEAVFYF
PGCGSERLFS QVGLATQAML WNVGVQTVLP PGYLCCGYPQ RGNGDFDKAE KMITDNRVLF
HRVANTLNYL DIKTVVVSCG TCYDQLAGYQ FEQIFPGCRI IDIHEFLAEK GVKLSGVTGV
KYMYHDPCHS PMKLQDPLKI VNELIQLEDG KAIAKNDRCC GESGTLAVTR PDISTQVRFR
KQIEMEKGAN DLRKGDFAGD VKVLTSCPSC LQGLTRFDAD SETTADYIVV EMAQKLLGKD
WVQDYVAKAN QGGIERVLV