Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1563 |
Symbol | |
ID | 6183691 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 1360913 |
End bp | 1362259 |
Gene Length | 1347 bp |
Protein Length | 448 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 641672084 |
Product | (dimethylallyl)adenosine tRNA methylthiotransferase |
Protein accession | YP_001798255 |
Protein GI | 171464142 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0621] 2-methylthioadenine synthetase |
TIGRFAM ID | [TIGR00089] RNA modification enzyme, MiaB family [TIGR01574] tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 0.739198 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 88 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAAGC TCTATATCAA AACCTTCGGC TGTCAAATGA ACGAGTATGA CTCGGGCAAG ATGGCCGACC TCTTGCACGC TGATGAAGGC ATGGTCATGA CAGATCGCCC AGAAGATGCA GACGTGGTGC TTCTTAACAC CTGCTCCATT CGAGAAAAGG CTGAAGACAA AGTCTTCTCT GATTTAGGCC GACTACGCGA ACTTAAAAAA ACTAAACCTA ATCTCCTTAT TGGTGTTGGC GGCTGTGTTG CTAGCCAAGA AGGTCAGCAA ATAGTAAGTC ATGCGCCCTA TGTTGATGTG GTTTTTGGTC CACAAACATT ACATCGCTTG TCAGACCTCA TTGCAAAGCG TCGAGAAACC GGCCTCTTTC AGGTTGACAT CTCTTTTCCG GAAATTGAAA AGTTTGATCA TCTTCCTGCA TCACGCCAAA CTCGTGGCTC AGCCTATGTA TCGATCATGG AAGGCTGCTC TAAATATTGC AGCTACTGCG TTGTTCCCTA TACGCGTGGC GAAGAAGTCT CTAGATCATT TGATGATGTG CTTACCGAGG TGGCTGGACT AGCCAGCAAA GGTGTCAAAG AAATTGTTTT GCTTGGCCAA AACGTAAATG CGTATTTGGG CAAGATGGGT GACCGCCAAG AAATTGCCGA CTTTGCCCTT CTCATTGAAT ATATCGTCGA AATTCCGGGA GTTGAGCGGA TTCGATTTAC TACCAGTCAT CCAAAAGAAT TTACGCAACG CCTCATTGAT GTGTATACCA AAGTGCCAAA ACTAGTAAGC CACTTACATC TGCCAGTACA GCATGGATCA GATGCCATGC TATCCGCGAT GAAGCGTGGT TATACAGCGT TGGAATTCAA AAGCATTATT CGCAAAATGC GCGCAGTCCG CCCTGACCTC ACACTATCGA GCGACTTTAT TGTGGGCTTT CCAGGTGAAA CTGAAGCTGA CTTTGAAAAG TTACTCAAGA TGGTGGAAGA GCTTAATTTT GACAACAGCT TTTGCTTCAT CTTCAGCCCT CGTCCCGGCA CCCCGGCAGC TAATCTGCAT GATGACACGC CGTATGAAGT AAAGCTCAAG CGTTTGCAAA CCTTGTTAGC ACTGGTTGAA AGCCAAGCAA ATCAAATTAG TCAAAAAATG TTGGGCAATA TCGAACGCGT CTTGATTGAG GGCCTCGCAA AGGATGGCAT TAACTTACAG GGTCGAGCAG AAAACAATCG TGTGATTCAT TTCACGGCAC CAGCTCAGAA TATAGAAAAC CTGATCGGCC AAATGGTAGA CATCCGTATC ACCGAAGTTC TTAACTACAC CCTACGAGGC AAACTAGTAG AAGCGTATGT CCACTAA
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Protein sequence | MKKLYIKTFG CQMNEYDSGK MADLLHADEG MVMTDRPEDA DVVLLNTCSI REKAEDKVFS DLGRLRELKK TKPNLLIGVG GCVASQEGQQ IVSHAPYVDV VFGPQTLHRL SDLIAKRRET GLFQVDISFP EIEKFDHLPA SRQTRGSAYV SIMEGCSKYC SYCVVPYTRG EEVSRSFDDV LTEVAGLASK GVKEIVLLGQ NVNAYLGKMG DRQEIADFAL LIEYIVEIPG VERIRFTTSH PKEFTQRLID VYTKVPKLVS HLHLPVQHGS DAMLSAMKRG YTALEFKSII RKMRAVRPDL TLSSDFIVGF PGETEADFEK LLKMVEELNF DNSFCFIFSP RPGTPAANLH DDTPYEVKLK RLQTLLALVE SQANQISQKM LGNIERVLIE GLAKDGINLQ GRAENNRVIH FTAPAQNIEN LIGQMVDIRI TEVLNYTLRG KLVEAYVH
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