Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1417 |
Symbol | |
ID | 6183758 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | - |
Start bp | 1213835 |
End bp | 1215793 |
Gene Length | 1959 bp |
Protein Length | 652 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641671958 |
Product | DNA primase |
Protein accession | YP_001798130 |
Protein GI | 171464017 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0358] DNA primase (bacterial type) |
TIGRFAM ID | [TIGR01391] DNA primase, catalytic core |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 73 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCACTCA TTCCACAATC CTTTATCGCC GATCTCTTAA ATCGAGTAGA CATCGTTGAT GTGGTTGGGC AGCACGTAAA ACTAAAAAAA GCGGGCGCGA ACTTTCAAGG TTTGTGCCCC TTTCATTCAG AGAAGTCTTC TTCTTTTTCG GTGTCGCCCA CTAAGCAATT TTATCACTGC TTTGGATGTG GTGCGCATGG GTCTGCTATT AGCTTCTTGA TGGAGTACTC CGGCCTTGGA TATGTAGATG CGATTGAAGA TTTAGCGCGC TCTGCAGGCC TTGATGTTCC GCGTGAAGAA CGCACTGCCA ATGATGTCGC TCGTCAGCAG CAAGCTATGG CATTAAGTGA AGTGATGAGT TCTGCTGCTG ATTGGTATCG CCAGCAACTC AAGGGTAATA CCCGAGCGGT CGAATATCTC AAAGGCAGAG GCCTTACAGG TGAGATCGCT AAACGCTACG CCTTGGGCTA TGCGCCTGAT GGCTGGCAAG GTCTAGAGAC TGTCTTTGGG GCCTATTCCA ATGATGAAGT GGCAAAGACT TTATTGGAGA GTGGCTTACT CATCCAGAGT GAGCAAGCCG AAGGCAGCCA ATCCATGAAG CGCTACGATC GTTTCCGTGA TCGCATCATG TTCCCGATTC GCAATCCTAA AGGCCAAACC ATTGGTTTCG GCGGGCGTAT TTTGGATCAA GGTGAGCCCA AGTATTTGAA TTCACCAGAG ACGCCACTCT TTTCGAAGGG CAACACACTC TATGGCTTGT TTGAAGCAAG ACAAGCGATT CGTGCGCAAG AGTATGTTCT TGTATGCGAA GGTTATATGG ATGTAGTGGC ATTAGCGCAA TTGGGATTTC CAAATGCGGT TGCTACTTTA GGTACTGCCT GCACTGCCAA TCATGTTCGC ATGCTATTGC GTCAAACCGA TAAGGTGGTG TTCTCATTTG ATGGCGATTC TGCTGGACAG CGTGCTGCGC AGCGCGCACT GGAGGCATGC CTGCCTCTCA TGTCAGACGA TAAAGAAATT CACTTTTTAT TCTTGCCAAC CGAACATGAT CCCGATAGTT ATGTGCGTGC CTATGGCGCA CCAGCTTTTG AAAAAGTCAT TAAAGAGGCA ACGTCTATCT CTAGTTTCTT CTTTAAGGTG GTGAGCGAAG GCCATGAGCT CACTACTCCG GAGGGTAGAG CCCATACGCA TCATGCAGCT AAACCCCTTT TACTTTCTAT GCCGCCAATT GCACTACGCA CACAAATCTT GCGTGAGCTG GCTATTCGAA CTAATACAAC TCCTGCAGAG CTTGAAGCAT TTTGTGGTTT AACAGTAGCG CCTGCGCCGG TGCGACAGAC GACTTATCAG CCGATGCAAG CAAGAACTCC AGGTGGTCAT AATCAGAGCG CTTTTTCAGG CATTGGTAAT CGTCAAGGAG CGCCATGGCA GGCATCTAAA GGATCTGCAA AACGGGTTGC AACACAAAAC ATTGAGCCCC CTAAAGCACC AACTGATTTA GCGGAACAAA TGTTGCGTGT GATTATTCAA TTTCCGCATT TAGGAAAGGC ATTAGATGCC AATAAACGTG CGCTTGCATT AAAAGCAGCA GAGCAACGAT CAGAAAAAGC CCATGCCTTA ATGAAAGATT TTTTGGCGCA GTGTGATTTG GTTGAGTTGA TTCCTGGCGA GGGTAATAAG CCAGCTACTG TAGGAGCAGG AGCCTTTGCG ATGTTTCAAG ATCAACTCTC TCGCAGCGAG TTAGCCCCTT TGTATGAGGT CCTCAGAAAT CGCGTAATGG GCTCTGATTT GGAGATCGAA GGCGCTGCCG CGGACCTTGA TGGGGCATTT AAAAAGCTGG AATTGATCCA CCTTAAGCAA GAAATGACTG AAATTGCTCA AAAGATTGCT GGAGGCACAG CAACCGAGCA AGATAAAGCC CGTTATCGCG AATTGGGCGA AAAGCTGAAA TTCTCCTAA
|
Protein sequence | MALIPQSFIA DLLNRVDIVD VVGQHVKLKK AGANFQGLCP FHSEKSSSFS VSPTKQFYHC FGCGAHGSAI SFLMEYSGLG YVDAIEDLAR SAGLDVPREE RTANDVARQQ QAMALSEVMS SAADWYRQQL KGNTRAVEYL KGRGLTGEIA KRYALGYAPD GWQGLETVFG AYSNDEVAKT LLESGLLIQS EQAEGSQSMK RYDRFRDRIM FPIRNPKGQT IGFGGRILDQ GEPKYLNSPE TPLFSKGNTL YGLFEARQAI RAQEYVLVCE GYMDVVALAQ LGFPNAVATL GTACTANHVR MLLRQTDKVV FSFDGDSAGQ RAAQRALEAC LPLMSDDKEI HFLFLPTEHD PDSYVRAYGA PAFEKVIKEA TSISSFFFKV VSEGHELTTP EGRAHTHHAA KPLLLSMPPI ALRTQILREL AIRTNTTPAE LEAFCGLTVA PAPVRQTTYQ PMQARTPGGH NQSAFSGIGN RQGAPWQASK GSAKRVATQN IEPPKAPTDL AEQMLRVIIQ FPHLGKALDA NKRALALKAA EQRSEKAHAL MKDFLAQCDL VELIPGEGNK PATVGAGAFA MFQDQLSRSE LAPLYEVLRN RVMGSDLEIE GAAADLDGAF KKLELIHLKQ EMTEIAQKIA GGTATEQDKA RYRELGEKLK FS
|
| |