| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pnec_1416 |
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| Symbol | |
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| ID | 6183377 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010531 |
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| Strand | - |
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| Start bp | 1210896 |
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| End bp | 1213598 |
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| Gene Length | 2703 bp |
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| Protein Length | 900 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 641671957 |
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| Product | RNA polymerase, sigma 70 subunit, RpoD |
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| Protein accession | YP_001798129 |
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| Protein GI | 171464016 |
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| COG category | [K] Transcription |
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| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
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| TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.322339 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 73 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTGAATA CCAAGACCAA AAAACCAGCT CCCAAAGCGA AAACTACTGC TAAGCTAGTA
AAAGCTGCCG CTAAACTAGC TCCAAAAGCT AAGGCACCAG CCAAACCAGT TAAGACTGTT
GCAAAAGCAC CAGCCAAACC AGTTAAGACT GTTGCAAAAG CACCAGCCAA ACCAGTTAAG
ACTGTTGCAA AAGCACCAGC CAAACCAGTT AAGACTGTTG CAAAAGCACC AGCCAAACCA
GTTAAGACTG TTGCAAAAGC ACCAGCCAAA CCAGTTAAGA CTGTTGCAAA AGCACCAGCC
AAACCAGTTA AGACTGTTGC AAAAGCACCA GCCAAACCAG TTAAGACTGT TGCAAAAGCA
CCAGCCAAAC CAGTTAAGAC TGTTGCAAAA GCACCAGCCA AACCAGTTAA GACTGTTGCA
AAAGCACCAG CCAAACCAGT TAAGACTGTT GCAAAAGCAC CAGCCAAACC AGTTAAGACT
GTTGCAAAAG CACCAGCCAA ACCAGTTAAG ACTGCAGCTA AACCAGTTGT AAAAGCTCCC
GCGAAATCTG CCAAGGCAGA AGTCAAGGTT GAAAAAGGTA AAGTAGTAGT AGCTCCTAAG
GTTGAGTCAG TTAAAGAATC AAAAGCAGCA AAAGAGGCTA AAGAAACAAA AGAAGTCAAA
GGTAAAAAAG CCAAGACTGC AGAACAAGAA GCGCCCGTAG TTGTTGAGGA GGAAAAGAAG
CGTGGCCGCA AAGCGAAAGT GGATGCTTCT GCTGAAGCAG TTGAGCCAGT ATTAACGGAT
CGCCAAAAAG CACGTGAGCG CAAAGCTAAA GAGAAGGCCC TTTTAAAAGA ATTTGCTGCA
CAACAGCTAG GCACCGAAGA GCAACAAGAA TTACGTCGTG CTCGCTTGAA AACTTTGATC
AAGATGGGTA TGTCCAAGGG GTATTTAACC CAAGGTGAGA TGAATGACGT GATGTCTGAC
GAGCTGTCTG ATGCAGACGC ACTGGAAACT TTGATTAGCT TGCTTAATGA CATCGGTATT
ACTGTTTACG AACAGGCTCC TGATGCAGAA ACATTAATCC TTTCTGACAA TACAGCAGCA
GCCGCTTCAG AAGAAGAGGC TGAAGCTGCT TTATCTACTG TTGACTCAGA ATTCGGACGC
ACTACAGACC CAGTACGTAT GTATATGCGT GAAATGGGTA CGGTTGACTT GTTGACTCGC
GAAGGCGAGA TTGTCATTGC GAAGAAAATT GAAGCCGGCC TCAAAGATAT GGTGATGGCT
TTGGCTGCTT GTCCTGTAAC GATTGCTGAG ATTCTGAGTA ACGTTGACAA GATTGCTAGC
GGTGAAATAG AGATTGACCA GTTTGTAGAT GGTTTGGTTG ATCCAAATGC AGAAGATATT
AAGCTTGGAC CTGAAGAGCC AGAAGTTGAT CCAGATGCCG AAGAGGGCGA AGAAGATGGA
GAAGATGAAG GCGGCGGTGG TGCTGCAACA GCAAATGCTA AACAGTTGGA GGAGTTGAAG
CAAATCTCTT TAGAGAAATT TGCGATTGTT CGTGCGCAAG CGAAAAAAAT GCGTCGTGCG
TTTGATAAAG ATGGTTACAA CTGCCCTGCA TACATTAAGG CGCAGGATGC AATTCGTGCT
GAATTGCTCG GTTTCCGTTT AACTGCCAAG AGTGTCGAAA AGTTATGTGA CACCATGCGT
TCACAAGTGG ACCAAGTATG GAAGCTTGAG CGCGGTATTG TTAGCTTGTT AGTGGACAAG
GTTGGTGTAA ATCGTGGTGA AGTATTAAAA GACTTCCCTA AGATGTCTAT GAATTTAGCT
TGGACTGACA AGTTGCTCAA AGAGAACAAG CCATATAGCG CTCTATTGCA ACGCAACGTA
CCAGCTATTC AAGAGCTTCA GCAGAAGTTG ATCGATATTC AGAAGAATGT TGTTATTCCA
CTTCCAGAGT TAAAAGAAGT AAATAAGCAA ATGATCGCGG GCGAGAAGCG TGCTCGTGAA
GCAAAACGTG AGATGACAGT AGCCAACTTA CGTTTGGTAA TCTCGATTGC TAAGAAATAC
ACTAATCGTG GTTTGCAATT CTTGGATTTG ATTCAAGAAG GTAATATCGG TTTGATGAAG
GCGGTAGATA AATTTGAATA TCGTCGTGGT TATAAGTTCT CCACCTATGC AACTTGGTGG
ATTCGTCAGG CGATTACTCG TTCGATTGCC GACCAGGCAC GTACGATCCG TATACCGGTT
CACATGATTG AGACGATCAA CAAGATGAAC CGTATCAGCC GTCAGATCTT GCAAGAAACT
GGTCATGAGC CAGATGCTGC AACCTTGGCG CTGAAGATGG AGATTCCGGA AGACAAGATC
CGTAAGATCA TGAAGATCGC TAAAGAGCCT GTCTCTATGG AAACACCGAT TGGTGACGAT
GAAGATTCTC ATTTGGGCGA CTTCATTGAG GATGGCAATA CATTAGCCCC AGCTGAAGCA
GCATTGCATA ACTCTATGCG CGATGTTGTG AAGGATGTTC TCGATTCATT AACACCGCGT
GAAGCCAAAG TATTGCGCAT GCGCTTTGGT GTTGAGATGA GTACCGATCA CACTCTCGAA
GAGGTAGGTA AACAGTTTGA CGTAACGCGT GAGCGTATTC GTCAGATTGA GGCTAAGGCC
CTAAGAAAGA TGCGTCATCC AAGCCGTAGT GACAAACTCA AGACCTTCCT CGAAGAGGAT
TAA
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| Protein sequence | MLNTKTKKPA PKAKTTAKLV KAAAKLAPKA KAPAKPVKTV AKAPAKPVKT VAKAPAKPVK
TVAKAPAKPV KTVAKAPAKP VKTVAKAPAK PVKTVAKAPA KPVKTVAKAP AKPVKTVAKA
PAKPVKTVAK APAKPVKTVA KAPAKPVKTV AKAPAKPVKT VAKAPAKPVK TAAKPVVKAP
AKSAKAEVKV EKGKVVVAPK VESVKESKAA KEAKETKEVK GKKAKTAEQE APVVVEEEKK
RGRKAKVDAS AEAVEPVLTD RQKARERKAK EKALLKEFAA QQLGTEEQQE LRRARLKTLI
KMGMSKGYLT QGEMNDVMSD ELSDADALET LISLLNDIGI TVYEQAPDAE TLILSDNTAA
AASEEEAEAA LSTVDSEFGR TTDPVRMYMR EMGTVDLLTR EGEIVIAKKI EAGLKDMVMA
LAACPVTIAE ILSNVDKIAS GEIEIDQFVD GLVDPNAEDI KLGPEEPEVD PDAEEGEEDG
EDEGGGGAAT ANAKQLEELK QISLEKFAIV RAQAKKMRRA FDKDGYNCPA YIKAQDAIRA
ELLGFRLTAK SVEKLCDTMR SQVDQVWKLE RGIVSLLVDK VGVNRGEVLK DFPKMSMNLA
WTDKLLKENK PYSALLQRNV PAIQELQQKL IDIQKNVVIP LPELKEVNKQ MIAGEKRARE
AKREMTVANL RLVISIAKKY TNRGLQFLDL IQEGNIGLMK AVDKFEYRRG YKFSTYATWW
IRQAITRSIA DQARTIRIPV HMIETINKMN RISRQILQET GHEPDAATLA LKMEIPEDKI
RKIMKIAKEP VSMETPIGDD EDSHLGDFIE DGNTLAPAEA ALHNSMRDVV KDVLDSLTPR
EAKVLRMRFG VEMSTDHTLE EVGKQFDVTR ERIRQIEAKA LRKMRHPSRS DKLKTFLEED
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