Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pnec_1403 |
Symbol | |
ID | 6183645 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Polynucleobacter necessarius subsp. necessarius STIR1 |
Kingdom | Bacteria |
Replicon accession | NC_010531 |
Strand | + |
Start bp | 1201038 |
End bp | 1202615 |
Gene Length | 1578 bp |
Protein Length | 525 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641671946 |
Product | alkyl hydroperoxide reductase, F subunit |
Protein accession | YP_001798119 |
Protein GI | 171464006 |
COG category | [O] Posttranslational modification, protein turnover, chaperones |
COG ID | [COG3634] Alkyl hydroperoxide reductase, large subunit |
TIGRFAM ID | [TIGR03140] alkyl hydroperoxide reductase, F subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 76 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCGATA CCAACATCAA ATCTCAATTA AAAGTATATT TTGAAAAGAT TGTTAGTCCC ATCGCTCTCG TTGCAAGCCT AAATGACAGC GACAGCTCCA AGCAAATGCT TGAGCTTTTA AACGAAGTAG CTGAGCAATC CGATAAGATC ACTGTTAAAA CAGATGGCAA GGCTGCCCGT ACTCCTAGCT TTACTGTTGG CAAAGTAGAT CAGGAGGCGC GCATTACTTT CGCCGGCCTA CCAATGGGTC ATGAAATGAC TTCTTTCATT CTGGCTATTT TGCAAGCAAG TGGTTATCCG GCAAAAGTAG AGCAAGAAAT AATAGAACGC ATTACCAATC TAGAAGGCAA GCGAAGCTTC CAAACATTTA TTTCCTTGCC ATGCCATAAC TGCCCAGATG TTGTACGGGC GCTGAATTTG ATGGCAGCTC TAAACCCAAA TATCACTCAC GAGATGGTTG ATGGCGCACT TTACCAAGAG CTAGTAGATC AATTCCAAAT CATGGCAGTC CCAACAGTCA TCCTCAATGG CGAGGTATTT GGTCAAGGCC GCATGAGTGT TGAAGAAATT GTTGCCAAAC TAGATAACTC AAGCCCCAAA GAAGAAGCTG CAAAACTGTC TGCCAAAGAT CCGTTTGGTG TTTTGGTGAT TGGTGGCGCT CCTGCGGGCT CCGCTGCAGC TATCTATGCA GCACGTAAAG GCATTCGCAC CGGCATTGTG GCTGAGCGAT TTGGCGGTCA AGTGATGGAC ACCATGGGCA TTGAAAACTT TATCTCCGTT AAAGAGACCG AGGGGCCTAA GTTAGTCCAA GCACTTGAGC AGCACGTGAA GAGCTATGCA GTCGATATTA TGAATTTGCA ACGTGCAAAC GCATTACGAA AAACAGCCGG TGGTGTTGAG GTGGAGTTAG CCAATGGCGT AGCTCTCACC AGCAAGTCTG TGATTTTGAG TACTGGTGCT CGCTGGAGAG AGATGAATGT TCCAGGCGAG CAAGAGTATC GCGGCAAAGG GGTGGCCTAC TGCCCTCATT GCGATGGTCC GCTATTTAAA GGCAAACGAG TTGCAGTGAT TGGTGGCGGA AACTCTGGCG TAGAGGCCGC AATTGATTTG GCGGGCATTG TGAGCCACGT CACTCTGATT GAGTTTGATA GCAAACTGCG TGCCGATGCA GTGTTGCAAA AGAAAATGGC CAGTATGCCA AACGTCACCG TCATCATGAG TGCACTCACT AAAGAAGTAT TGGGTGCAGA CGGCAAGGTC AGCGGCCTAC GCTATCAAGA CCGTACGAAT AATACTGAGC ATGCGATTGA ACTTGAAGGG ATCTTTGTGC AAATTGGGTT ATTGCCAAAC ACCGACTGGC TCAAAGGAAC TATCGACTTA TCCAAGCACG GTGAAGTTAT TGTCGATGCA AAAGGAGAAA CCTCTTTGCC CGGGGTATTT GCAGCTGGAG ATTGCACTAC CGTTCCCTAC AAGCAAATCA TTATTGCAAT GGGCGAAGGC GCTAAAGCTT CACTCGGCGC ATTTGACTAC CTGATTCGCT CATCCGTTGT CGAGCCTGAG GAAGCAGTTG CTGCTTAA
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Protein sequence | MLDTNIKSQL KVYFEKIVSP IALVASLNDS DSSKQMLELL NEVAEQSDKI TVKTDGKAAR TPSFTVGKVD QEARITFAGL PMGHEMTSFI LAILQASGYP AKVEQEIIER ITNLEGKRSF QTFISLPCHN CPDVVRALNL MAALNPNITH EMVDGALYQE LVDQFQIMAV PTVILNGEVF GQGRMSVEEI VAKLDNSSPK EEAAKLSAKD PFGVLVIGGA PAGSAAAIYA ARKGIRTGIV AERFGGQVMD TMGIENFISV KETEGPKLVQ ALEQHVKSYA VDIMNLQRAN ALRKTAGGVE VELANGVALT SKSVILSTGA RWREMNVPGE QEYRGKGVAY CPHCDGPLFK GKRVAVIGGG NSGVEAAIDL AGIVSHVTLI EFDSKLRADA VLQKKMASMP NVTVIMSALT KEVLGADGKV SGLRYQDRTN NTEHAIELEG IFVQIGLLPN TDWLKGTIDL SKHGEVIVDA KGETSLPGVF AAGDCTTVPY KQIIIAMGEG AKASLGAFDY LIRSSVVEPE EAVAA
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